LOCUS BC079101 1631 bp mRNA linear ROD 17-JUL-2006
DEFINITION Rattus norvegicus ubiquitin specific peptidase 18, mRNA (cDNA clone
MGC:94088 IMAGE:7124857), complete cds.
ACCESSION BC079101
VERSION BC079101.1
KEYWORDS MGC.
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
REFERENCE 1 (bases 1 to 1631)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1631)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-AUG-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Howard Jacobs
cDNA Library Preparation: Express Genomics
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 183 Row: k Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 62078848.
FEATURES Location/Qualifiers
source 1..1631
/organism="Rattus norvegicus"
/mol_type="mRNA"
/db_xref="taxon:10116"
/clone="MGC:94088 IMAGE:7124857"
/tissue_type="Lung, rat (Brown Norway)"
/clone_lib="NIH_MGC_232"
/lab_host="DH10B"
/note="Vector: pExpress1"
gene 1..1631
/gene="Usp18"
/db_xref="GeneID:312688"
/db_xref="RGD:1359153"
CDS 119..1207
/gene="Usp18"
/codon_start=1
/product="ubiquitin specific peptidase 18"
/protein_id="AAH79101.1"
/db_xref="GeneID:312688"
/db_xref="RGD:1359153"
/translation="MGKGFGLLRKTCQSVVANPQQHSALEEEKNMKRKRVLSRELCSA
WDRPHGFVGLHNIGQTCCLNSLIQVFMMNVDFRMVLKRITVPRGAEEQKRSVPFQLLL
LLEKMQDSRQKAVLPTELVQCLQKYNVPLFVQHDAAHLFLTIWNLTKDQITDIDLAER
LQDLFTIWTEESLMCVGCGAESSRRGKLLTLSLPLFDMDSKPLKTLEDALRCFFQPKE
LASSDKCFCETCGKKTPCKQAQKLTGFPQTLTIHLMRFSVRNSQTVKICHSVYFPQSL
DFSQILPTTDQSEIHYELFAVIAHVGMADFGHYCAYIRNPVDGEWFCFNDSHVCWVTW
KDVQCTYGDHIYRWRETAYLLVYMKTGS"
ORIGIN
1 gcttcggtgc ttgagagggt cctttctggc ttgtgtagac ccttcctgga agtgaagttg
61 tggaatcctg acctccagtc ctgcccgttc caagcgtggg gtttgggtgt gatcactaat
121 gggcaaaggg tttgggctcc tgaggaaaac ctgccagtca gttgtggcta atcctcagca
181 gcactcagct ctggaggaag agaagaacat gaagaggaag agagtgctgt ctagagagct
241 ctgcagtgcc tgggaccgcc ctcatggttt cgttgggtta cacaacatcg gtcagacatg
301 ttgccttaac tccttgattc aggtgttcat gatgaatgtg gacttcagga tggtattgaa
361 gaggataaca gtgccacgag gggcagaaga acagaagaga agtgtcccct tccagctgct
421 tttgctgctg gagaagatgc aggacagccg gcagaaggca gtgctgccca cggagctcgt
481 tcagtgcctc cagaaataca acgtgccatt gtttgtccag cacgatgctg ctcatctctt
541 ccttacaatc tggaacctga ctaaggacca gatcacggac atagacttgg cagagcggct
601 gcaggatctg ttcacaatct ggaccgagga gtccctgatg tgcgtgggct gtggagcaga
661 gagcagcagg aggggcaagt tgctcactct ctctcttcct ctttttgata tggattcaaa
721 gcccctaaaa acactggagg atgccttgag atgtttcttc cagcccaaag agttagcaag
781 ctcagacaag tgcttctgtg agacctgcgg gaagaagacg ccttgcaaac aggctcagaa
841 gctgactggt ttccctcaga ccctgaccat ccacctcatg agattctctg tcaggaactc
901 acagacagta aagatctgcc actcagtgta cttcccgcag agcttggatt tcagtcagat
961 tctgccaacc acggatcagt ctgagataca ctatgaactc tttgctgtga ttgcccatgt
1021 tgggatggca gacttcggtc attactgtgc ctacatccgg aatcccgtgg atggagaatg
1081 gttctgcttc aatgattcac atgtttgttg ggtgacctgg aaggatgtcc agtgtaccta
1141 tggggatcac atatatcgtt ggagggaaac tgcctatctc ttggtttaca tgaagactgg
1201 atcctgacag atatactcac accttcagag agtgacagac tcttttctcc tctcctgtac
1261 ccacatctgc tgcatttcaa cgagaatcgt aatttaaaaa ccataattaa gccctattta
1321 taagcaagga ttattattat tgctgtggct tggctgtagt ttgtctccca acagctcaca
1381 cacagaaggc ttggtcttta gtatggaggc gtttgggtga cagaactttt aagggacagg
1441 gcccagtggg aggtaatcag ttcatgggat ctctcttctg tgcactaata gttccttttc
1501 tgtttctccg tggtgatgca aacagggtga tccaacatgc cagtgccaag ctggttggat
1561 cctctagctt tcaaaattcc aagtcaaata aatgttatta cacactaaaa aaaaaaaaaa
1621 aaaaaaaaaa a
//