LOCUS NM_001173380 1106 bp mRNA linear ROD 03-APR-2024
DEFINITION Rattus norvegicus mannosidase beta like (Manbal), mRNA.
ACCESSION NM_001173380 XM_001067976 XM_002726286 XM_002729245 XM_575279
VERSION NM_001173380.1
KEYWORDS RefSeq; RefSeq Select.
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
REFERENCE 1 (bases 1 to 1106)
AUTHORS Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
TITLE Phylogenetic-based propagation of functional annotations within the
Gene Ontology consortium
JOURNAL Brief Bioinform 12 (5), 449-462 (2011)
PUBMED 21873635
REFERENCE 2 (bases 1 to 1106)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
PUBMED 12477932
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
FM056386.1 and BC091276.1.
On or before May 13, 2010 this sequence version replaced
XM_002729245.1, XM_575279.3, XM_002726286.1, XM_001067976.2.
Sequence Note: The RefSeq transcript and protein were derived from
genomic sequence to make the sequence consistent with the reference
genome assembly. The genomic coordinates used for the transcript
record were based on alignments.
##Evidence-Data-START##
Transcript exon combination :: FQ209453.1, CF976794.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMD00132261, SAMD00132262
[ECO:0000348]
##Evidence-Data-END##
##RefSeq-Attributes-START##
RefSeq Select criteria :: based on conservation, expression,
longest protein
##RefSeq-Attributes-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-56 FM056386.1 1-56
57-1106 BC091276.1 1-1050
FEATURES Location/Qualifiers
source 1..1106
/organism="Rattus norvegicus"
/mol_type="mRNA"
/strain="BN"
/db_xref="taxon:10116"
/chromosome="3"
/map="3q42"
gene 1..1106
/gene="Manbal"
/note="mannosidase beta like"
/db_xref="GeneID:499934"
/db_xref="RGD:1561447"
exon 1..31
/gene="Manbal"
/inference="alignment:Splign:2.1.0"
exon 32..239
/gene="Manbal"
/inference="alignment:Splign:2.1.0"
CDS 90..347
/gene="Manbal"
/note="mannosidase, beta A, lysosomal-like; mannosidase
beta A like"
/codon_start=1
/product="protein MANBAL"
/protein_id="NP_001166851.1"
/db_xref="GeneID:499934"
/db_xref="RGD:1561447"
/translation="MASDLDFSPPEVPEPTFLENLLRYGLFLGAIFQLICVLAIIVPI
PKSQEAEAEPSEPRSAEVPKKPKAPIPSTNKRPKKETKKKR"
exon 240..1084
/gene="Manbal"
/inference="alignment:Splign:2.1.0"
ORIGIN
1 cttccgttgc ggcggcacgg tgttaccgga gaacttggtt ctggagagca gtggatctca
61 agagacgcct ggcagtggtg ccttgggcca tggcctctga cctggatttc tcgcctcccg
121 aagtgcctga gcccaccttc ctggagaact tgctgcggta tgggctcttc ctgggagcca
181 tcttccagct catctgtgtc ctggccatca tcgtacccat tcccaagtcc caggaggcgg
241 aggcagaacc gtctgagccc aggagtgcag aggtgcccaa gaagcccaag gctcccatcc
301 cttccaccaa caagaggcca aagaaggaga ccaaaaagaa gcggtagact cagaggcctg
361 aggagcccaa ggccctagcc ttggggacag ccctcctggg aaccagcatc ctgtttgctc
421 tcaaagactg tctctctcct tggctcagag tctgagatga ttgaaactcc cttgactgca
481 gagatctgag cagtcgctaa gccccagctg tgcagaccac cacttcctct tccttctctc
541 ttgtggtaca caagagattc ccgagaccaa gcactgctct gagggttctg aagtcagatc
601 aagctcacag ggcaaactat tcacattagt cctctagccc aatgcgtcac taagtgtgga
661 attgttgcct aaggctgcag acacaccctc tcccatggct tggccacatt tgttacttct
721 gtatgcacag aacttctcgt gagttcaggt caggatgcat ggctctgcag tgtggagcta
781 gcccactcac tgcagcagcc aggtcctgaa gatgttgggg gttggtgggg gagggacagt
841 cgaaggcctg ggcccagtga tgcctgcagg agaaggtact ggctgaatga ggccagattt
901 cccgagcaca gcctttgtaa gcctttgaag taggcttgtc actttcagac caacctcttt
961 gtaacccatt ttaacattca aagtgccttt gacttcagcc tgtcctcccc acatctctca
1021 ttccctgacc agtaaaggaa atgatgtgga gaagtcaaag caaataaagt gtcccgcatg
1081 ctgaaaaaaa aaaaaaaaaa aaaaaa
//