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Items: 11

Select item 49443841.

The Gene Expression Omnibus database

Emily Clough, Tanya Barrett

Methods Mol Biol. Author manuscript; available in PMC 2016 Jul 14.

Published in final edited form as: Methods Mol Biol. 2016; 1418: 93–110. doi: 10.1007/978-1-4939-3578-9_5

PMCID:: PMC4944384

Abstract Article PDF–555K

Select item 35310842.

NCBI GEO: archive for functional genomics data sets—update

Tanya Barrett, Stephen E. Wilhite, Pierre Ledoux, Carlos Evangelista, Irene F. Kim, Maxim Tomashevsky, Kimberly A. Marshall, Katherine H. Phillippy, Patti M. Sherman, Michelle Holko, Andrey Yefanov, Hyeseung Lee, Naigong Zhang, Cynthia L. Robertson, Nadezhda Serova, Sean Davis, Alexandra Soboleva

Nucleic Acids Res. 2013 Jan; 41(Database issue): D991–D995. Published online 2012 Nov 26. doi: 10.1093/nar/gks1193

PMCID:: PMC3531084

Abstract Article PDF–3.1M

Select item 33417983.

Strategies to Explore Functional Genomics Data Sets in NCBI’s GEO Database

Stephen E. Wilhite, Tanya Barrett

Methods Mol Biol. Author manuscript; available in PMC 2012 Jul 1.

Published in final edited form as: Methods Mol Biol. 2012; 802: 41–53. doi: 10.1007/978-1-61779-400-1_3

PMCID:: PMC3341798

Abstract Article PDF–802K

Select item 30137364.

NCBI GEO: archive for functional genomics data sets—10 years on

Tanya Barrett, Dennis B. Troup, Stephen E. Wilhite, Pierre Ledoux, Carlos Evangelista, Irene F. Kim, Maxim Tomashevsky, Kimberly A. Marshall, Katherine H. Phillippy, Patti M. Sherman, Rolf N. Muertter, Michelle Holko, Oluwabukunmi Ayanbule, Andrey Yefanov, Alexandra Soboleva

Nucleic Acids Res. 2011 Jan; 39(Database issue): D1005–D1010. Published online 2010 Nov 20. doi: 10.1093/nar/gkq1184

PMCID:: PMC3013736

Abstract Article PDF–2.0M

Select item 26865385.

NCBI GEO: archive for high-throughput functional genomic data

Tanya Barrett, Dennis B. Troup, Stephen E. Wilhite, Pierre Ledoux, Dmitry Rudnev, Carlos Evangelista, Irene F. Kim, Alexandra Soboleva, Maxim Tomashevsky, Kimberly A. Marshall, Katherine H. Phillippy, Patti M. Sherman, Rolf N. Muertter, Ron Edgar

Nucleic Acids Res. 2009 Jan; 37(Database issue): D885–D890. Published online 2008 Oct 21. doi: 10.1093/nar/gkn764

PMCID:: PMC2686538

Abstract Article PDF–3.4M

Select item 22704036.

NCBI GEO standards and services for microarray data

Ron Edgar, Tanya Barrett

Nat Biotechnol. Author manuscript; available in PMC 2008 Mar 20.

Published in final edited form as: Nat Biotechnol. 2006 Dec; 24(12): 1471–1472. doi: 10.1038/nbt1206-1471

PMCID:: PMC2270403

Article PDF–155K

Select item 16697527.

NCBI GEO: mining tens of millions of expression profiles—database and tools update

Tanya Barrett, Dennis B. Troup, Stephen E. Wilhite, Pierre Ledoux, Dmitry Rudnev, Carlos Evangelista, Irene F. Kim, Alexandra Soboleva, Maxim Tomashevsky, Ron Edgar

Nucleic Acids Res. 2007 Jan; 35(Database issue): D760–D765. Published online 2006 Nov 11. doi: 10.1093/nar/gkl887

PMCID:: PMC1669752

Abstract Article PDF–295K

Select item 16199008.

Gene Expression Omnibus (GEO): Microarray data storage, submission, retrieval, and analysis

Tanya Barrett, Ron Edgar

Methods Enzymol. Author manuscript; available in PMC 2006 Oct 23.

Published in final edited form as: Methods Enzymol. 2006; 411: 352–369. doi: 10.1016/S0076-6879(06)11019-8

PMCID:: PMC1619900

Abstract Article PDF–594K

Select item 16198999.

Mining Microarray Data at NCBI’s Gene Expression Omnibus (GEO)

Tanya Barrett, Ron Edgar

Methods Mol Biol. Author manuscript; available in PMC 2006 Oct 23.

Published in final edited form as: Methods Mol Biol. 2006; 338: 175–190. doi: 10.1385/1-59745-097-9:175

PMCID:: PMC1619899

Abstract Article PDF–545K

Select item 53997610.

NCBI GEO: mining millions of expression profiles—database and tools

Tanya Barrett, Tugba O. Suzek, Dennis B. Troup, Stephen E. Wilhite, Wing-Chi Ngau, Pierre Ledoux, Dmitry Rudnev, Alex E. Lash, Wataru Fujibuchi, Ron Edgar

Nucleic Acids Res. 2005 Jan 1; 33(Database Issue): D562–D566. Published online 2004 Dec 17. doi: 10.1093/nar/gki022