PMC Links for GEO Profiles (Select 123396379) - PMC

Select item 100339371.

Assessment of community efforts to advance network-based prediction of protein–protein interactions

Xu-Wen Wang, Lorenzo Madeddu, Kerstin Spirohn, Leonardo Martini, Adriano Fazzone, Luca Becchetti, Thomas P. Wytock, István A. Kovács, Olivér M. Balogh, Bettina Benczik, Mátyás Pétervári, Bence Ágg, Péter Ferdinandy, Loan Vulliard, Jörg Menche, Stefania Colonnese, Manuela Petti, Gaetano Scarano, Francesca Cuomo, Tong Hao, Florent Laval, Luc Willems, Jean-Claude Twizere, Marc Vidal, Michael A. Calderwood, Enrico Petrillo, Albert-László Barabási, Edwin K. Silverman, Joseph Loscalzo, Paola Velardi, Yang-Yu Liu

Nat Commun. 2023; 14: 1582. Published online 2023 Mar 22. doi: 10.1038/s41467-023-37079-7

PMCID:: PMC10033937

Abstract Article PDF–1.5M

Select item 86503892.

Copy Number Variation Analysis of IL22 and LCE3C in Different Subtypes of Psoriasis in a Chinese Han Population

Caihong Zhu, Wenmin Fei, Wenjun Wang, Lili Tang, Jinping Gao, Fusheng Zhou

Med Sci Monit. 2021; 27: e934927-1–e934927-8. Prepublished online 2021 Nov 18. Published online 2021 Dec 2. doi: 10.12659/MSM.934927

PMCID:: PMC8650389

Abstract Article PDF–464K

Select item 71699833.

A reference map of the human binary protein interactome

Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood

Nature. Author manuscript; available in PMC 2020 Oct 8.

Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x

PMCID:: PMC7169983

Abstract Article PDF–5.4M

Select item 56511974.

Psoriasis-associated Late Cornified Envelope (LCE) Proteins Have Antibacterial Activity

Hanna Niehues, Lam C. Tsoi, Danique A. van der Krieken, Patrick A.M. Jansen, Merel A.W. Oortveld, Diana Rodijk-Olthuis, Ivonne M.J.J. van Vlijmen, Wiljan J.A.J. Hendriks, Richard W. Helder, Joke A. Bouwstra, Ellen H. van den Bogaard, Philip E. Stuart, Rajan P. Nair, James T. Elder, Patrick L.J.M. Zeeuwen, Joost Schalkwijk

J Invest Dermatol. Author manuscript; available in PMC 2018 Nov 1.

Published in final edited form as: J Invest Dermatol. 2017 Nov; 137(11): 2380–2388. Published online 2017 Jun 17. doi: 10.1016/j.jid.2017.06.003

PMCID:: PMC5651197

Abstract Article PDF–789K

Select item 48221435.

Increased Risk of Psoriasis due to combined effect of HLA-Cw6 and LCE3 risk alleles in Indian population

Aditi Chandra, Anirudhya Lahiri, Swapan Senapati, Baidehi Basu, Saurabh Ghosh, Indranil Mukhopadhyay, Akhilesh Behra, Somenath Sarkar, Gobinda Chatterjee, Raghunath Chatterjee

Sci Rep. 2016; 6: 24059. Published online 2016 Apr 6. doi: 10.1038/srep24059

PMCID:: PMC4822143

Abstract Article PDF–579K

Select item 42665886.

A proteome-scale map of the human interactome network

Thomas Rolland, Murat Taşan, Benoit Charloteaux, Samuel J. Pevzner, Quan Zhong, Nidhi Sahni, Song Yi, Irma Lemmens, Celia Fontanillo, Roberto Mosca, Atanas Kamburov, Susan D. Ghiassian, Xinping Yang, Lila Ghamsari, Dawit Balcha, Bridget E. Begg, Pascal Braun, Marc Brehme, Martin P. Broly, Anne-Ruxandra Carvunis, Dan Convery-Zupan, Roser Corominas, Jasmin Coulombe-Huntington, Elizabeth Dann, Matija Dreze, Amélie Dricot, Changyu Fan, Eric Franzosa, Fana Gebreab, Bryan J. Gutierrez, Madeleine F. Hardy, Mike Jin, Shuli Kang, Ruth Kiros, Guan Ning Lin, Katja Luck, Andrew MacWilliams, Jörg Menche, Ryan R. Murray, Alexandre Palagi, Matthew M. Poulin, Xavier Rambout, John Rasla, Patrick Reichert, Viviana Romero, Elien Ruyssinck, Julie M. Sahalie, Annemarie Scholz, Akash A. Shah, Amitabh Sharma, Yun Shen, Kerstin Spirohn, Stanley Tam, Alexander O. Tejeda, Shelly A. Wanamaker, Jean-Claude Twizere, Kerwin Vega, Jennifer Walsh, Michael E. Cusick, Yu Xia, Albert-László Barabási, Lilia M. Iakoucheva, Patrick Aloy, Javier De Las Rivas, Jan Tavernier, Michael A. Calderwood, David E. Hill, Tong Hao, Frederick P. Roth, Marc Vidal

Cell. Author manuscript; available in PMC 2015 Nov 20.

Published in final edited form as: Cell. 2014 Nov 20; 159(5): 1212–1226. doi: 10.1016/j.cell.2014.10.050

PMCID:: PMC4266588

Abstract Article PDF–3.1M

Select item 33863167.

Meta-analysis confirms the LCE3C_LCE3B deletion as a risk factor for psoriasis in several ethnic groups and finds interaction with HLA-Cw6

Eva Riveira-Munoz, Su-Min He, Georgia Escaramís, Philip E Stuart, Ulrike Hüffmeier, Catherine Lee, Brian Kirby, Akira Oka, Emiliano Giardina, Wilson Liao, Judith Bergboer, Kati Kainu, Rafael de Cid, Batmunkh Munkhbat, Patrick L J M Zeeuwen, John A L Armour, Annie Poon, Tomotaka Mabuchi, Akira Ozawa, Agnieszka Zawirska, David A Burden, Jonathan N Barker, Francesca Capon, Heiko Traupe, Liang-Dan Sun, Yong Cui, Xian-Yong Yin, Gang Chen, Henry Lim, Rajan Nair, John Voorhess, Trilokraj Tejasvi, Ramón Pujol, Namid Munkhtuvshin, Judith Fischer, Juha Kere, Joost Schalkwijk, Anne Bowcock, Pui-Yan Kwok, Giuseppe Novelli, Hidetoshi Inoko, Anthony W Ryan, Richard C Trembath, André Reis, Xue-Jun Zhang, James T Elder, Xavier Estivill

J Invest Dermatol. Author manuscript; available in PMC 2012 Jun 29.

Published in final edited form as: J Invest Dermatol. 2011 May; 131(5): 1105–1109. Published online 2010 Nov 25. doi: 10.1038/jid.2010.350

PMCID:: PMC3386316

Abstract Article PDF–397K

Select item 32856648.

A Replication Study of the Association between Rheumatoid Arthritis and Deletion of the Late Cornified Envelope Genes LCE3B and LCE3C

Judith G. M. Bergboer, Maša Umićević-Mirkov, Jaap Fransen, Martin den Heijer, Barbara Franke, Piet L. C. M. van Riel, Joost Schalkwijk, Marieke J. H. Coenen, on behalf of the Nijmegen Biomedical Study principal investigators

PLoS One. 2012; 7(2): e32045. Published online 2012 Feb 23. doi: 10.1371/journal.pone.0032045

PMCID:: PMC3285664

Abstract Article PDF–83K

Select item 31780599.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 312873410.

Deletion of the late cornified envelope (LCE) 3B and 3C genes as a susceptibility factor for psoriasis

Rafael de Cid, Eva Riveira-Munoz, Patrick L.J.M. Zeeuwen, Jason Robarge, Wilson Liao, Emma N. Dannhauser, Emiliano Giardina, Philip E. Stuart, Rajan Nair, Cynthia Helms, Georgia Escaramís, Ester Ballana, Gemma Martín-Ezquerra, Martin den Heijer, Marijke Kamsteeg, Irma Joosten, Evan E. Eichler, Conxi Lázaro, Ramón M. Pujol, Lluís Armengol, Gonçalo Abecasis, James T. Elder, Giuseppe Novelli, John A.L. Armour, Pui Kwok, Anne Bowcock, Joost Schalkwijk, Xavier Estivill

Nat Genet. Author manuscript; available in PMC 2011 Jul 2.

Published in final edited form as: Nat Genet. 2009 Feb; 41(2): 211–215. Published online 2009 Jan 25. doi: 10.1038/ng.313

PMCID:: PMC3128734

Abstract Article PDF–945K

Select item 307847211.

Psoriasis Risk Genes of the Late Cornified Envelope-3 Group Are Distinctly Expressed Compared with Genes of Other LCE Groups

Judith G.M. Bergboer, Geuranne S. Tjabringa, Marijke Kamsteeg, Ivonne M.J.J. van Vlijmen-Willems, Diana Rodijk-Olthuis, Patrick A.M. Jansen, Jean-Yves Thuret, Masashi Narita, Akemi Ishida-Yamamoto, Patrick L.J.M. Zeeuwen, Joost Schalkwijk

Am J Pathol. 2011 Apr; 178(4): 1470–1477. doi: 10.1016/j.ajpath.2010.12.017

PMCID:: PMC3078472

Abstract Article PDF–1.3M

Select item 285980912.

Mutation analysis of the LCE3B/LCE3C genes in Psoriasis

Eliecer Coto, Jorge Santos-Juanes, Pablo Coto-Segura, Marta Díaz, Javier Soto, Rubén Queiro, Victoria Alvarez

BMC Med Genet. 2010; 11: 45. Published online 2010 Mar 23. doi: 10.1186/1471-2350-11-45

PMCID:: PMC2859809

Abstract Article PDF–467K

Select item 262894613.

Global analysis of host-pathogen interactions that regulate early stage HIV-1 replication

Renate König, Yingyao Zhou, Daniel Elleder, Tracy L. Diamond, Ghislain M.C. Bonamy, Jeffrey T. Irelan, Chih-yuan Chiang, Buu P. Tu, Paul D. De Jesus, Caroline E. Lilley, Shannon Seidel, Amanda M. Opaluch, Jeremy S. Caldwell, Matthew D. Weitzman, Kelli L. Kuhen, Sourav Bandyopadhyay, Trey Ideker, Anthony P. Orth, Loren J. Miraglia, Frederic D. Bushman, John A. Young, Sumit K. Chanda

Cell. Author manuscript; available in PMC 2009 Oct 3.

Published in final edited form as: Cell. 2008 Oct 3; 135(1): 49–60. doi: 10.1016/j.cell.2008.07.032

PMCID:: PMC2628946

Abstract Article PDF–3.4M

Select item 13924114.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

Select item 6081915.

Differentially expressed late constituents of the epidermal cornified envelope

D. Marshall, M. J. Hardman, K. M. Nield, C. Byrne

Proc Natl Acad Sci U S A. 2001 Nov 6; 98(23): 13031–13036. doi: 10.1073/pnas.231489198

PMCID:: PMC60819

Abstract Article PDF–784K

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