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    Odf1 outer dense fiber of sperm tails 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 24610, updated on 9-Dec-2024

    Summary

    Official Symbol
    Odf1provided by RGD
    Official Full Name
    outer dense fiber of sperm tails 1provided by RGD
    Primary source
    RGD:3228
    See related
    EnsemblRapid:ENSRNOG00000006578 AllianceGenome:RGD:3228
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Enables protein domain specific binding activity. Predicted to be involved in cell differentiation and spermatogenesis. Predicted to be located in manchette and sperm flagellum. Predicted to be active in outer dense fiber. Orthologous to human ODF1 (outer dense fiber of sperm tails 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 3185.7) See more
    Orthologs
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    Genomic context

    See Odf1 in Genome Data Viewer
    Location:
    7q22
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (71262270..71274621)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (69377427..69389662)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (77066580..77074712)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene poly(A) polymerase beta, pseudogene 1 Neighboring gene uncharacterized LOC120093637 Neighboring gene ribosomal protein S29, pseudogene 17 Neighboring gene uncharacterized LOC103692890 Neighboring gene uncharacterized LOC102550353 Neighboring gene uncharacterized LOC134479897 Neighboring gene KLF transcription factor 10

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in cell differentiation  
    involved_in spermatogenesis  
    Component Evidence Code Pubs
    located_in centrosome  
    located_in cytoplasm  
    located_in manchette  
    located_in manchette  
    located_in motile cilium  
    is_active_in outer dense fiber  
    is_active_in outer dense fiber  
    located_in outer dense fiber  
    located_in polymeric cytoskeletal fiber  
    located_in sperm flagellum  
    located_in sperm flagellum  

    General protein information

    Preferred Names
    outer dense fiber protein 1
    Names
    RTS 5/1
    Sperm outer dense fiber major protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_024126.5NP_077040.2  outer dense fiber protein 1

      See identical proteins and their annotated locations for NP_077040.2

      Status: PROVISIONAL

      Source sequence(s)
      BC078708
      UniProtKB/Swiss-Prot
      P21769, Q62652, Q63390, Q63534, Q63535
      UniProtKB/TrEMBL
      A6HR54
      Conserved Domains (1) summary
      cd06482
      Location:102188
      ACD_HspB10; Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell ...

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      71262270..71274621
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039078408.2XP_038934336.1  outer dense fiber protein 1 isoform X3

      UniProtKB/TrEMBL
      A6HR53
      Conserved Domains (1) summary
      cd06482
      Location:26112
      ACD_HspB10; Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell ...
    2. XM_017594659.3XP_017450148.1  outer dense fiber protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8L2UI24
      Related
      ENSRNOP00000008700.5, ENSRNOT00000008700.7
    3. XM_063262993.1XP_063119063.1  outer dense fiber protein 1 isoform X2

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