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Gpatch1 G patch domain containing 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 292810, updated on 9-Dec-2024

Summary

Official Symbol
Gpatch1provided by RGD
Official Full Name
G patch domain containing 1provided by RGD
Primary source
RGD:1308935
See related
EnsemblRapid:ENSRNOG00000011584 AllianceGenome:RGD:1308935
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Gpatc1
Summary
Predicted to enable RNA binding activity. Predicted to be involved in mRNA processing. Predicted to be part of catalytic step 2 spliceosome. Predicted to be active in nucleus. Orthologous to human GPATCH1 (G-patch domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Biased expression in Kidney (RPKM 53.7), Thymus (RPKM 52.0) and 9 other tissues See more
Orthologs
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Genomic context

See Gpatch1 in Genome Data Viewer
Location:
1q21
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (97062539..97111487, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (87925606..87974544, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (91529096..91578032, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134485109 Neighboring gene transfer RNA threonine (anticodon AGU) 1 Neighboring gene WD repeat domain 88 Neighboring gene small nuclear ribonucleoprotein polypeptide G like 1 Neighboring gene rhophilin, Rho GTPase binding protein 2 Neighboring gene FA core complex associated protein 24

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables RNA binding  
Process Evidence Code Pubs
involved_in mRNA processing  
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome  
is_active_in nucleus  

General protein information

Preferred Names
G patch domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106246.1NP_001099716.1  G patch domain-containing protein 1

    See identical proteins and their annotated locations for NP_001099716.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473979
    UniProtKB/TrEMBL
    A6JAA6, A6JAA7, F1LU70
    Related
    ENSRNOP00000015791.5, ENSRNOT00000015791.9
    Conserved Domains (2) summary
    pfam01585
    Location:154172
    G-patch; G-patch domain
    pfam07713
    Location:31116
    DUF1604; Protein of unknown function (DUF1604)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    97062539..97111487 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063283709.1XP_063139779.1  G patch domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A6JAA6
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