U.S. flag

An official website of the United States government

Links from GEO Profiles

    • Showing Current items.

    Atmin ATM interactor [ Rattus norvegicus (Norway rat) ]

    Gene ID: 315037, updated on 9-Dec-2024

    Summary

    Official Symbol
    Atminprovided by RGD
    Official Full Name
    ATM interactorprovided by RGD
    Primary source
    RGD:1305781
    See related
    EnsemblRapid:ENSRNOG00000011422 AllianceGenome:RGD:1305781
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Asciz; RGD1305781
    Summary
    Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; dynein complex binding activity; and transcription cis-regulatory region binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within motile cilium assembly; positive regulation of gene expression; and positive regulation of non-motile cilium assembly. Predicted to be located in nuclear body. Orthologous to human ATMIN (ATM interactor). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 50.6), Thymus (RPKM 35.5) and 9 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Atmin in Genome Data Viewer
    Location:
    19q12
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (61905343..61922443)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (44996506..45013606)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (49482482..49499682)

    Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene C-x(9)-C motif containing 2 Neighboring gene centromere protein N Neighboring gene uncharacterized LOC134483651 Neighboring gene similar to human chromosome 16 open reading frame 46 Neighboring gene glycine cleavage system protein H

    Genomic regions, transcripts, and products

    General gene information

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in nuclear body  
    located_in nuclear body  
    is_active_in nucleus  

    General protein information

    Preferred Names
    ATM interactor
    Names
    ATM/ATR-Substrate Chk2-Interacting Zn2+-finger protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001191786.2NP_001178715.1  ATM interactor

      Status: VALIDATED

      Source sequence(s)
      BC105857, JAXUCZ010000019
      UniProtKB/TrEMBL
      F1LN81
      Related
      ENSRNOP00000015180.8, ENSRNOT00000015180.9
      Conserved Domains (1) summary
      sd00017
      Location:129156
      ZF_C2H2; C2H2 Zn finger [structural motif]

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086037.1 Reference GRCr8

      Range
      61905343..61922443
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039097804.1XP_038953732.1  ATM interactor isoform X1

      UniProtKB/TrEMBL
      Q3B8Q7
    External link. Please review our privacy policy.