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Tmem87a transmembrane protein 87A [ Rattus norvegicus (Norway rat) ]

Gene ID: 366170, updated on 9-Dec-2024

Summary

Official Symbol
Tmem87aprovided by RGD
Official Full Name
transmembrane protein 87Aprovided by RGD
Primary source
RGD:1309417
See related
EnsemblRapid:ENSRNOG00000008455 AllianceGenome:RGD:1309417
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1309417
Summary
Predicted to be involved in cellular response to mechanical stimulus; detection of mechanical stimulus involved in sensory perception of touch; and retrograde transport, endosome to Golgi. Predicted to be located in plasma membrane and ruffle. Predicted to be active in Golgi cisterna membrane. Orthologous to human TMEM87A (transmembrane protein 87A). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Biased expression in Thymus (RPKM 231.8), Lung (RPKM 210.3) and 9 other tissues See more
Orthologs
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Genomic context

See Tmem87a in Genome Data Viewer
Location:
3q35
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (127761490..127807314, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (107307726..107353571, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (112128138..112174097, complement)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene phospholipase A2, group IVF Neighboring gene ribosomal protein S25, pseudogene 11 Neighboring gene VPS39 subunit of HOPS complex Neighboring gene glucosidase, alpha; neutral C Neighboring gene uncharacterized LOC108350445 Neighboring gene small nucleolar RNA SNORA15 Neighboring gene calpain 3

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Gene Ontology Provided by RGD

Component Evidence Code Pubs
is_active_in Golgi apparatus  
located_in Golgi apparatus  
is_active_in Golgi cisterna membrane  
located_in Golgi cisterna membrane  
located_in Golgi membrane  
located_in cytosol  
located_in plasma membrane  
located_in ruffle  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001427730.1NP_001414659.1  transmembrane protein 87A precursor

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000003
    UniProtKB/TrEMBL
    A0A8I6GIL4, A6HPI7
    Related
    ENSRNOP00000090087.1, ENSRNOT00000105742.2

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    127761490..127807314 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063284283.1XP_063140353.1  transmembrane protein 87A isoform X6

    UniProtKB/TrEMBL
    A6HPI7
  2. XM_063284279.1XP_063140349.1  transmembrane protein 87A isoform X2

    UniProtKB/TrEMBL
    A0A8I6GIL4, A6HPI7
  3. XM_063284280.1XP_063140350.1  transmembrane protein 87A isoform X3

    UniProtKB/TrEMBL
    A6HPI7
  4. XM_063284278.1XP_063140348.1  transmembrane protein 87A isoform X1

    UniProtKB/TrEMBL
    A0A8I6ACY3, A6HPI7
    Related
    ENSRNOP00000091883.1, ENSRNOT00000100419.2
  5. XM_063284281.1XP_063140351.1  transmembrane protein 87A isoform X4

  6. XM_063284282.1XP_063140352.1  transmembrane protein 87A isoform X5

RNA

  1. XR_010064674.1 RNA Sequence

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