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Perm1 PPARGC1 and ESRR induced regulator, muscle 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 313776, updated on 9-Dec-2024

Summary

Official Symbol
Perm1provided by RGD
Official Full Name
PPARGC1 and ESRR induced regulator, muscle 1provided by RGD
Primary source
RGD:1304931
See related
EnsemblRapid:ENSRNOG00000020244 AllianceGenome:RGD:1304931
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1304931
Summary
Predicted to be involved in regulation of DNA-templated transcription and response to muscle activity. Predicted to be active in cytoplasm and nucleus. Orthologous to human PERM1 (PPARGC1 and ESRR induced regulator, muscle 1). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Biased expression in Heart (RPKM 582.9) and Muscle (RPKM 374.1) See more
Orthologs
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Genomic context

See Perm1 in Genome Data Viewer
Location:
5q36
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (172082249..172087542)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (166800030..166805323)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (173640780..173646073)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene agrin Neighboring gene ISG15 ubiquitin-like modifier Neighboring gene pleckstrin homology domain containing N1 Neighboring gene kelch-like family member 17 Neighboring gene NOC2-like nucleolar associated transcriptional repressor Neighboring gene sterile alpha motif domain containing 11

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription  
involved_in regulation of DNA-templated transcription  
involved_in response to muscle activity  
involved_in response to muscle activity  
Component Evidence Code Pubs
is_active_in cytoplasm  
located_in cytoplasm  
is_active_in nucleus  
located_in nucleus  

General protein information

Preferred Names
PGC-1 and ERR-induced regulator in muscle protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108001.1NP_001101471.1  PGC-1 and ERR-induced regulator in muscle protein 1

    See identical proteins and their annotated locations for NP_001101471.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473968
    UniProtKB/TrEMBL
    A6IUW7, D3ZH76
    Related
    ENSRNOP00000027476.5, ENSRNOT00000027476.7
    Conserved Domains (1) summary
    PHA03247
    Location:111564
    PHA03247; large tegument protein UL36; Provisional

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    172082249..172087542
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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