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Smptb polypyrimidine tract-binding protein [ Rattus norvegicus (Norway rat) ]

Gene ID: 302879, updated on 4-Jan-2025

Summary

Symbol
Smptbprovided by RGD
Full Name
polypyrimidine tract-binding proteinprovided by RGD
Primary source
RGD:727953
See related
EnsemblRapid:ENSRNOG00000066859 AllianceGenome:RGD:727953
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Enables RNA binding activity. Involved in alternative mRNA splicing, via spliceosome. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

See Smptb in Genome Data Viewer
Location:
Xq12
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (19316019..19317901, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (16609016..16610898, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (17484839..17486721, complement)

Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134484129 Neighboring gene polypyrimidine tract-binding protein 1-like Neighboring gene interleukin enhancer binding factor 3, pseudogene 1 Neighboring gene BTB domain containing 35, family member 28

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RGD

General protein information

Preferred Names
polypyrimidine tract-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_182818.1NP_877970.1  polypyrimidine tract-binding protein

    See identical proteins and their annotated locations for NP_877970.1

    Status: VALIDATED

    Source sequence(s)
    AY223520
    UniProtKB/TrEMBL
    A0A8I6AAX2, A6KPC6, Q80XZ1
    Related
    ENSRNOP00000108135.1, ENSRNOT00000151027.1
    Conserved Domains (1) summary
    TIGR01649
    Location:27588
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086039.1 Reference GRCr8

    Range
    19316019..19317901 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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