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NCBI Reference Sequence: NP_001102700.1
Identical Proteins FASTA Graphics
LOCUS NP_001102700 643 aa linear ROD 23-MAR-2023 DEFINITION zinc finger protein 398 [Rattus norvegicus]. ACCESSION NP_001102700 XP_001053129 XP_575459 VERSION NP_001102700.1 DBSOURCE REFSEQ: accession NM_001109230.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (residues 1 to 643) AUTHORS Gaudet P, Livstone MS, Lewis SE and Thomas PD. TITLE Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium JOURNAL Brief Bioinform 12 (5), 449-462 (2011) PUBMED 21873635 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH474011.2. On or before Oct 4, 2007 this sequence version replaced XP_001053129.1, XP_575459.1. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMD00132262, SAMD00132269 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on conservation, expression, longest protein ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..643 /organism="Rattus norvegicus" /db_xref="taxon:10116" /chromosome="4" /map="4q24" Protein 1..643 /product="zinc finger protein 398" /calculated_mol_wt=71487 Region 143..203 /region_name="KRAB" /note="krueppel associated box; smart00349" /db_xref="CDD:214630" Region <344..588 /region_name="COG5048" /note="FOG: Zn-finger [General function prediction only]" /db_xref="CDD:227381" Region 346..365 /region_name="C2H2 Zn finger" /note="C2H2 Zn finger [structural motif]" /db_xref="CDD:275368" Region 373..393 /region_name="C2H2 Zn finger" /note="C2H2 Zn finger [structural motif]" /db_xref="CDD:275368" Region 401..421 /region_name="C2H2 Zn finger" /note="C2H2 Zn finger [structural motif]" /db_xref="CDD:275368" Region 430..450 /region_name="C2H2 Zn finger" /note="C2H2 Zn finger [structural motif]" /db_xref="CDD:275368" Region 458..478 /region_name="C2H2 Zn finger" /note="C2H2 Zn finger [structural motif]" /db_xref="CDD:275368" Region 486..506 /region_name="C2H2 Zn finger" /note="C2H2 Zn finger [structural motif]" /db_xref="CDD:275368" Site order(491,493,495,497..498,501..502,505,519,521,525..526, 529..530,533,547,549,551,553..554,557..558,561) /site_type="other" /note="putative nucleic acid binding site [nucleotide binding]" /db_xref="CDD:275368" Region 514..534 /region_name="C2H2 Zn finger" /note="C2H2 Zn finger [structural motif]" /db_xref="CDD:275368" Region 542..562 /region_name="C2H2 Zn finger" /note="C2H2 Zn finger [structural motif]" /db_xref="CDD:275368" Region 570..589 /region_name="C2H2 Zn finger" /note="C2H2 Zn finger [structural motif]" /db_xref="CDD:275368" CDS 1..643 /gene="Zfp398" /gene_synonym="RGD1562129" /coded_by="NM_001109230.1:231..2162" /db_xref="GeneID:500108" /db_xref="RGD:1562129" ORIGIN 1 maeataapts ewdsecltsl qplplppppa aneahlqtaa islwtvvaav qaierkvevh 61 srrllhlegr tgtaekklag cektvtelgn qldgkwavlg tllqeygllq rrlenlenll 121 rnrnfwilrl ppgikgdipk vpvafddvsi yfstpewekl eewqkelykn imkgnyesli 181 smdyamnqpd vlsqiqpege hstddqprpe asempadpse epglstsdil swikqeeepq 241 vgvpqeskes elykgtyade elvikaedla raslcpevpv afsapppaaa kdtfsdiafk 301 sqqctpmapf grtatdlpea segqvtftql gsyplpppvg eqvfschhcg knlsqdmlmt 361 hqcshaaehp ltcaqcpkhf tpqadlgsts qdhanetppt cphcartfth psrltyhlrv 421 hnsterpflc pdcpkrfadq arltshrrah aterpfrcpq cgrsfslkis lllhqrghaq 481 erpfscpqcg idfnghsali rhqmihtger pypctdcsks fmrkehllnh rrlhtgerpf 541 qcphcgksfi rkhhlmkhqr ihtgerpypc avcgrsfryk qtlkdhlrtg hnggcagdrd 601 psvqppdppg plltaletsg lgvstegles sqwygegsgg vvl //
Whole sequence Selected region from: to:
Conserved Domains
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