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zinc finger protein 398 [Rattus norvegicus]

NCBI Reference Sequence: NP_001102700.1

Identical Proteins FASTA Graphics 

LOCUS       NP_001102700             643 aa            linear   ROD 23-MAR-2023
DEFINITION  zinc finger protein 398 [Rattus norvegicus].
ACCESSION   NP_001102700 XP_001053129 XP_575459
VERSION     NP_001102700.1
DBSOURCE    REFSEQ: accession NM_001109230.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (residues 1 to 643)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474011.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XP_001053129.1, XP_575459.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132262,
                              SAMD00132269 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Rattus norvegicus"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q24"
     Protein         1..643
                     /product="zinc finger protein 398"
                     /calculated_mol_wt=71487
     Region          143..203
                     /region_name="KRAB"
                     /note="krueppel associated box; smart00349"
                     /db_xref="CDD:214630"
     Region          <344..588
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          346..365
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          373..393
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          401..421
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          430..450
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          458..478
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          486..506
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(491,493,495,497..498,501..502,505,519,521,525..526,
                     529..530,533,547,549,551,553..554,557..558,561)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          514..534
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          542..562
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          570..589
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..643
                     /gene="Zfp398"
                     /gene_synonym="RGD1562129"
                     /coded_by="NM_001109230.1:231..2162"
                     /db_xref="GeneID:500108"
                     /db_xref="RGD:1562129"
ORIGIN      
        1 maeataapts ewdsecltsl qplplppppa aneahlqtaa islwtvvaav qaierkvevh
       61 srrllhlegr tgtaekklag cektvtelgn qldgkwavlg tllqeygllq rrlenlenll
      121 rnrnfwilrl ppgikgdipk vpvafddvsi yfstpewekl eewqkelykn imkgnyesli
      181 smdyamnqpd vlsqiqpege hstddqprpe asempadpse epglstsdil swikqeeepq
      241 vgvpqeskes elykgtyade elvikaedla raslcpevpv afsapppaaa kdtfsdiafk
      301 sqqctpmapf grtatdlpea segqvtftql gsyplpppvg eqvfschhcg knlsqdmlmt
      361 hqcshaaehp ltcaqcpkhf tpqadlgsts qdhanetppt cphcartfth psrltyhlrv
      421 hnsterpflc pdcpkrfadq arltshrrah aterpfrcpq cgrsfslkis lllhqrghaq
      481 erpfscpqcg idfnghsali rhqmihtger pypctdcsks fmrkehllnh rrlhtgerpf
      541 qcphcgksfi rkhhlmkhqr ihtgerpypc avcgrsfryk qtlkdhlrtg hnggcagdrd
      601 psvqppdppg plltaletsg lgvstegles sqwygegsgg vvl
//
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