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GenBank: AHG02186.1
Identical Proteins FASTA Graphics
LOCUS AHG02186 575 aa linear BCT 26-JUL-2016 DEFINITION hypothetical protein HALLA_20005 (plasmid) [Halostagnicola larsenii XH-48]. ACCESSION AHG02186 VERSION AHG02186.1 DBLINK BioProject: PRJNA71415 BioSample: SAMN00117518 DBSOURCE accession CP007058.1 KEYWORDS . SOURCE Halostagnicola larsenii XH-48 ORGANISM Halostagnicola larsenii XH-48 Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group; Halobacteria; Halobacteriales; Natrialbaceae; Halostagnicola. REFERENCE 1 (residues 1 to 575) AUTHORS Anderson,I., Huntemann,M., Han,J., Chen,A., Kyrpides,N., Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N., Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N., Hua,S.X. and Woyke,T. CONSRTM DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (10-JAN-2014) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 01/10/2014 10:56:10 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 2.3 (rev. 423251) Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes :: 4,246 CDS :: 4,171 Pseudo Genes :: 19 rRNAs :: 6 (5S, 16S, 23S) tRNAs :: 49 ncRNA :: 1 Frameshifted Genes :: 2 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..575 /organism="Halostagnicola larsenii XH-48" /strain="XH-48" /isolation_source="sediment of saline lake" /culture_collection="DSM:17691" /type_material="type strain of Halostagnicola larsenii" /db_xref="taxon:797299" /plasmid="unnamed" /geo_loc_name="China: Lake Xilinhot, Inner Mongolia" /lat_lon="43.916 N 115.616 E" Protein 1..575 /product="hypothetical protein" Region <26..180 /region_name="DdpA" /note="ABC-type transport system, periplasmic component [Amino acid transport and metabolism]; COG0747" /db_xref="CDD:440510" Region 216..>574 /region_name="DdpA" /note="ABC-type transport system, periplasmic component [Amino acid transport and metabolism]; COG0747" /db_xref="CDD:440510" CDS 1..575 /locus_tag="HALLA_20005" /coded_by="CP007058.1:46382..48109" /inference="COORDINATES: ab initio prediction:GeneMarkS+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS+." /transl_table=11 ORIGIN 1 magggviagt iggsalhrit tdnttnqvsv tilslpadnd qrsseiaref eknlravgin 61 asieprseae llraillehd fdcyvtrrrs dhdpdflyem fhssydpeag wqnpfgftnp 121 qvdelleqqr smdgdertet vnellnklaq thpivpicvs aerrvvrtdr fdgwddhsle 181 srlgylglep nayewsdged vvltailtdt ratknlnplt athhdkgtfv dllydslave 241 ddgeirpwla eswewdgava tvylrtgcqf hddhpvtard veftyeflad tslgeqdahs 301 ptpryrglvd avervsavdd htvqiridah adigerafti pilprhvwep evsnrlengq 361 eptqgtweiv tadsipkigs gpyafvnqep rsslqferfd qhftrresvd lpeptpdelv 421 flvglnsglv mselqdgnad mtasrmavge igdtsdrsle liepatprfy hvgfnvrnap 481 fsspnfrevi aslidreslv seifngqatp tvtpvtdewt pedlewdgea pyapffrksd 541 etgdedsgnl dveqvkrafe rygfqysddg erlvr //
Whole sequence Selected region from: to:
Conserved Domains
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