LOCUS EDM11677 660 aa linear ROD 26-JUL-2016
DEFINITION similar to hypothetical protein (predicted), isoform CRA_a [Rattus
norvegicus].
ACCESSION EDM11677
VERSION EDM11677.1
DBLINK BioProject: PRJNA13999
BioSample: SAMN03000701
DBSOURCE accession CH473984.1
KEYWORDS .
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
REFERENCE 1 (residues 1 to 660)
AUTHORS Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
TITLE Gene and alternative splicing annotation with AIR
JOURNAL Genome Res. 15 (1), 54-66 (2005)
PUBMED 15632090
REFERENCE 2 (residues 1 to 660)
AUTHORS Mural,R.J., Li,P.W., Adams,M.D., Amanatides,P.G., Baden-Tillson,H.,
Barnstead,M., Chin,S.H., Dew,I., Evans,C.A., Ferriera,S.,
Flanigan,M., Fosler,C., Glodek,A., Gu,Z., Holt,R.A., Jennings,D.,
Kraft,C.L., Lu,F., Nguyen,T., Nusskern,D.R., Pfannkoch,C.M.,
Sitter,C., Sutton,G.G., Venter,J.C., Wang,Z., Woodage,T.,
Zheng,X.H. and Zhong,F.
TITLE Direct Submission
JOURNAL Submitted (05-JUL-2005) Celera Genomics, 45 W. Gude Dr., Rockville,
MD 20850, USA
COMMENT Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..660
/organism="Rattus norvegicus"
/strain="BN; Sprague-Dawley"
/db_xref="taxon:10116"
/chromosome="5"
Protein 1..660
/product="similar to hypothetical protein (predicted),
isoform CRA_a"
Region 1..651
/region_name="Dpy19"
/note="C-mannosyltransferase Dpy19; cl41786"
/db_xref="CDD:455131"
Region 97..118
/region_name="putative TM segment 2"
/note="putative TM segment 2 [structural motif]"
/db_xref="CDD:439130"
Region 122..138
/region_name="putative TM segment 3"
/note="putative TM segment 3 [structural motif]"
/db_xref="CDD:439130"
Region 158..172
/region_name="putative TM segment 4"
/note="putative TM segment 4 [structural motif]"
/db_xref="CDD:439130"
Region 184..199
/region_name="putative TM segment 5"
/note="putative TM segment 5 [structural motif]"
/db_xref="CDD:439130"
Region 205..223
/region_name="putative TM segment 6"
/note="putative TM segment 6 [structural motif]"
/db_xref="CDD:439130"
Region 231..248
/region_name="putative TM segment 7"
/note="putative TM segment 7 [structural motif]"
/db_xref="CDD:439130"
Region 251..267
/region_name="putative TM segment 8"
/note="putative TM segment 8 [structural motif]"
/db_xref="CDD:439130"
Region 285..303
/region_name="putative TM segment 9"
/note="putative TM segment 9 [structural motif]"
/db_xref="CDD:439130"
Region 357..378
/region_name="putative TM segment 10"
/note="putative TM segment 10 [structural motif]"
/db_xref="CDD:439130"
Region 407..423
/region_name="putative TM segment 11"
/note="putative TM segment 11 [structural motif]"
/db_xref="CDD:439130"
Region 427..449
/region_name="putative TM segment 12"
/note="putative TM segment 12 [structural motif]"
/db_xref="CDD:439130"
Region 457..472
/region_name="putative TM segment 13"
/note="putative TM segment 13 [structural motif]"
/db_xref="CDD:439130"
CDS 1..660
/gene="RGD1305828_predicted"
/locus_tag="rCG_30533"
/coded_by="complement(join(CH473984.1:22985415..22985579,
CH473984.1:22986947..22987105,
CH473984.1:22992571..22992703,
CH473984.1:22995777..22995859,
CH473984.1:22996805..22996861,
CH473984.1:22999895..23000015,
CH473984.1:23003824..23003943,
CH473984.1:23007472..23007630,
CH473984.1:23012370..23012443,
CH473984.1:23012900..23012998,
CH473984.1:23013096..23013227,
CH473984.1:23015504..23015638,
CH473984.1:23018754..23018877,
CH473984.1:23025223..23025368,
CH473984.1:23025913..23026034,
CH473984.1:23026306..23026396,
CH473984.1:23029236..23029298))"
/note="gene_id=rCG30533.0 transcript_id=rCT30532.0
protein_id=rCP36006.0 isoform=CRA_a"
/db_xref="GeneID:297824"
ORIGIN
1 mmhvfylsay herkfwfsnr qelereitfq gdsaiyysyy kdmlkapsfe rgvyelthnn
61 ktislktina mqqmslypel iasvlyqatg sheviepvyf yigivfglqg iyvtalfvts
121 wlmsgtwlag mltvawflin rvdttrieys iplrenwalp yfacqvaalt gylkrnvnty
181 aerfcyllls tstytfmmvw eyshyilflq avslllldif svqqsdkvye vykiyifslf
241 lgyllqfenp allvspllsl tgafmlikcf qlnvkkgtfv akvikvfefy llctlpvtln
301 vivkmfvphk enehvlkfle vkfglnmtkn ftlnwllcqe slqapsqdff lrltqssllp
361 fyvlvlticl lsmtqvtfrr msgkskketa tledgriger peiiyhviht lllgslamlv
421 eglkfiwtpy vcmlaafgvc spelwmtllk wlrlrtvhpv llalilsmav ptiiglslwk
481 effprlitel telqefydpd tvelmtwikr qapvaavfag spqlmgvikl ctgwtvtslp
541 lysdddllkr neniyqiysk rsaediykil tsykanyliv edaicnemgt trgcrvkdll
601 dianghvvfe egdkltysky grfchevkin yspyvnyftr vywnrsyfvy kvntvisfqs
//