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NLR family member X1 isoform X1 [Rattus norvegicus]

NCBI Reference Sequence: XP_038937351.1

Identical Proteins FASTA Graphics 

LOCUS       XP_038937351             973 aa            linear   ROD 22-FEB-2024
DEFINITION  NLR family member X1 isoform X1 [Rattus norvegicus].
ACCESSION   XP_038937351
VERSION     XP_038937351.1
DBLINK      BioProject: PRJNA1074393
DBSOURCE    REFSEQ: accession XM_039081423.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086026) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..973
                     /organism="Rattus norvegicus"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     Protein         1..973
                     /product="NLR family member X1 isoform X1"
                     /calculated_mol_wt=107459
     Region          41..965
                     /region_name="NACHT"
                     /note="Predicted NTPase, NACHT family domain [Signal
                     transduction mechanisms]; COG5635"
                     /db_xref="CDD:444362"
     Region          158..318
                     /region_name="P-loop containing Nucleoside Triphosphate
                     Hydrolases"
                     /note="Members of the P-loop NTPase domain superfamily are
                     characterized by a conserved nucleotide phosphate-binding
                     motif, also referred to as the Walker A motif
                     (GxxxxGK[S/T], where x is any residue), and the Walker B
                     motif (hhhh[D/E], where h is a...; cl38936"
                     /db_xref="CDD:476819"
     Region          696..724
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          725..746
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          747..770
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          <751..881
                     /region_name="RNA1"
                     /note="Ran GTPase-activating protein (RanGAP) involved in
                     mRNA processing and transport [Translation, ribosomal
                     structure and biogenesis]; COG5238"
                     /db_xref="CDD:444072"
     Region          771..806
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          807..834
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          863..884
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     CDS             1..973
                     /gene="Nlrx1"
                     /gene_synonym="RGD1311293"
                     /coded_by="XM_039081423.2:597..3518"
                     /db_xref="GeneID:315599"
                     /db_xref="RGD:1311293"
ORIGIN      
        1 mrwgchlprt swgsglgrtv plpdelriqs swpfkgvhhp lrpprafirh hgnsadsapp
       61 pgrhgqlfrs isateaiqrh rrnltewfsr lpreerqfgp tfaldtvhvd pvirestpdd
      121 llrpstelat ghqrtqaelp plalsqlfdp dacgrrvqtv vlygtvgtgk stlvrkmvld
      181 wcygrlpafe llipfscedl sslgstpasl cqlvtqrytp lkevlplmna agsrllfvlh
      241 glerlnldfr lagtglcsdp eepgapaaim vnllrkymlp easilvttrp saigripsky
      301 vgrygeicgf sdtnlqklyf qlrlnqpdcg ygaggtgvsv tpaqrdnliq mlsrnleghh
      361 qiaaacflps ycwlvcatlh flhaptsagq tltsiytsfl rlnfngetld stdpsnlslm
      421 syaartmgkl ayegvssrkt yfseedvrgc leagikteee fqllqifrrd alrfflapcv
      481 epghlgtfvf tvpamqeyla alyivlglrk talqrvgkev fefvgrvged vslvlgivak
      541 llplrilpll fnllkvvprv fgrmvsksre avaqamvlem freedyyndd vldqmgasil
      601 gvegprrhpd eppedevfel fpmfmsglls ahnravlaql gcpiknldal enaqaikkkl
      661 gkmgrqvlpp selldhlffh yefqnqrfsa evlgslrqln lagvrmtplk ctvvasvlgs
      721 grhpldevnl ascqldpagl htlmpvllra rklglqlnnl gpeacrdlrd lllhdqcqit
      781 tlrlsnnplt aagvgvlmdg lagntsvthl sllhtdlgde glellaaqld rnkqlqelnv
      841 ayngagdtva lalakaarkh pslellhlyf nelssegrqv lrdlggsgeg garvvaslte
      901 gtavseywsv ilsevqrnln swdpvrvqrh lklllrdled srgatlnpwr kaqllrvese
      961 vktlleqlgg sgh
//
Feature
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