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    TRIM13 tripartite motif containing 13 [ Monodelphis domestica (gray short-tailed opossum) ]

    Gene ID: 100022167, updated on 8-May-2024

    Summary

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    Gene symbol
    TRIM13
    Gene description
    tripartite motif containing 13
    See related
    EnsemblRapid:ENSMODG00000024106
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Monodelphis domestica
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
    Orthologs
    human mouse all
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    Genomic context

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    See TRIM13 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_05 current mMonDom1.pri (GCF_027887165.1) 4 NC_077230.1 (319066383..319108916, complement)
    103 previous assembly MonDom5 (GCF_000002295.2) 4 NC_008804.1 (318242760..318280160, complement)

    Chromosome 4 - NC_077230.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC130453828 Neighboring gene microRNA mir-16-1 Neighboring gene microRNA mir-15a Neighboring gene potassium channel regulator Neighboring gene ran-specific GTPase-activating protein-like Neighboring gene uncharacterized LOC107649008 Neighboring gene SPRY domain containing 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in innate immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of NF-kappaB transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of canonical NF-kappaB signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of macroautophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase TRIM13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_027887165.1-RS_2023_05

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mMonDom1.pri

    Genomic

    1. NC_077230.1 Reference mMonDom1.pri

      Range
      319066383..319108916 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001368560.4 → XP_001368597.1  E3 ubiquitin-protein ligase TRIM13 isoform X2

      Related
      ENSMODP00000074572.1, ENSMODT00000136780.1
      Conserved Domains (2) summary
      smart00336
      Location:90 → 131
      BBOX; B-Box-type zinc finger
      cd00162
      Location:9 → 61
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

    2. XM_007495404.3 → XP_007495466.1  E3 ubiquitin-protein ligase TRIM13 isoform X1

      UniProtKB/TrEMBL
      F6WKK5
      Related
      ENSMODP00000090638.1, ENSMODT00000137371.1
      Conserved Domains (2) summary
      smart00336
      Location:108 → 149
      BBOX; B-Box-type zinc finger
      cd00162
      Location:27 → 79
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

    3. XM_056794823.1 → XP_056650801.1  E3 ubiquitin-protein ligase TRIM13 isoform X2

      Related
      ENSMODP00000067765.1, ENSMODT00000098774.1

    4. XM_056794824.1 → XP_056650802.1  E3 ubiquitin-protein ligase TRIM13 isoform X2

      Related
      ENSMODP00000089842.1, ENSMODT00000103313.1

    5. XM_056794825.1 → XP_056650803.1  E3 ubiquitin-protein ligase TRIM13 isoform X2

      Related
      ENSMODP00000069893.1, ENSMODT00000109658.1
    Nucleotide Protein
    Heading Accession and Version

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