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    Tmem52 transmembrane protein 52 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100362283, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Tmem52provided by RGD
    Official Full Name
    transmembrane protein 52provided by RGD
    Primary source
    RGD:2318502
    See related
    AllianceGenome:RGD:2318502
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in membrane. Orthologous to human TMEM52 (transmembrane protein 52). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 588.6) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Tmem52 in Genome Data Viewer
    Location:
    5q36
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (171330948..171332704)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (166048669..166050423)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (172887587..172889349)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene gamma-aminobutyric acid type A receptor subunit delta Neighboring gene cilia and flagella associated protein 74 Neighboring gene uncharacterized LOC120103052 Neighboring gene G protein subunit beta 1 Neighboring gene NAD kinase Neighboring gene ATP synthase peripheral stalk subunit d, pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein 52
    Names
    rCG31224-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001399170.1 → NP_001386099.1  transmembrane protein 52

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      A6IUQ1, D3ZP55
      Conserved Domains (1) summary
      pfam14979
      Location:35 → 177
      TMEM52; Transmembrane 52

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      171330948..171332704
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039111393.2 → XP_038967321.1  transmembrane protein 52 isoform X2

      Conserved Domains (1) summary
      pfam14979
      Location:44 → 183
      TMEM52; Transmembrane 52

    2. XM_006239606.5 → XP_006239668.1  transmembrane protein 52 isoform X1

      See identical proteins and their annotated locations for XP_006239668.1

      UniProtKB/TrEMBL
      A0A8I5ZVZ9, A0A8I6A194
      Conserved Domains (1) summary
      pfam14979
      Location:129 → 250
      TMEM52; Transmembrane 52
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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