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    RPS12 ribosomal protein S12 [ Ailuropoda melanoleuca (giant panda) ]

    Gene ID: 100467889, updated on 8-Mar-2024

    Summary

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    Gene symbol
    RPS12
    Gene description
    ribosomal protein S12
    Locus tag
    PANDA_021708
    See related
    Ensembl:ENSAMEG00000008015
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Ailuropoda melanoleuca
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
    Orthologs
    human mouse all
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    Genomic context

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    See RPS12 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103 current ASM200744v2 (GCF_002007445.1) 10 NC_048227.1 (79420138..79423044)
    102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003220159.1 (10772..13559)

    Chromosome 10 - NC_048227.1Genomic Context describing neighboring genes Neighboring gene splicing regulator RBM11-like Neighboring gene solute carrier family 18 member B1 Neighboring gene small nucleolar RNA SNORD101 Neighboring gene small nucleolar RNA SNORD100 Neighboring gene small nucleolar RNA SNORA33 Neighboring gene U6 spliceosomal RNA Neighboring gene arginase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small ribosomal subunit protein eS12; 40S ribosomal protein S12

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001304913.1 → NP_001291842.1  small ribosomal subunit protein eS12

      See identical proteins and their annotated locations for NP_001291842.1

      Status: PROVISIONAL

      Source sequence(s)
      GQ119361
      UniProtKB/TrEMBL
      D2I741, F2X216
      Related
      ENSAMEP00000008432.1, ENSAMET00000008784.2
      Conserved Domains (1) summary
      pfam01248
      Location:16 → 111
      Ribosomal_L7Ae; Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

    RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM200744v2 Primary Assembly

    Genomic

    1. NC_048227.1 Reference ASM200744v2 Primary Assembly

      Range
      79420138..79423044
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002930975.4 → XP_002931021.1  40S ribosomal protein S12 isoform X1

      See identical proteins and their annotated locations for XP_002931021.1

      UniProtKB/TrEMBL
      D2I741, F2X216
      Conserved Domains (1) summary
      pfam01248
      Location:16 → 111
      Ribosomal_L7Ae; Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

    2. XM_019793743.2 → XP_019649302.1  40S ribosomal protein S12 isoform X1

      UniProtKB/TrEMBL
      D2I741, F2X216
      Conserved Domains (1) summary
      pfam01248
      Location:16 → 111
      Ribosomal_L7Ae; Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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