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    CEP290 centrosomal protein 290 [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

    Gene ID: 102444721, updated on 10-Mar-2024

    Summary

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    Gene symbol
    CEP290
    Gene description
    centrosomal protein 290
    See related
    Ensembl:ENSPSIG00000002914
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pelodiscus sinensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
    Orthologs
    human mouse all
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    Genomic context

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    See CEP290 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    56
    Annotation release Status Assembly Chr Location
    102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005852615.1 (1026648..1148216)

    NW_005852615.1Genomic Context describing neighboring genes Neighboring gene KIT ligand Neighboring gene transmembrane O-mannosyltransferase targeting cadherins 3 Neighboring gene uncharacterized LOC112544265 Neighboring gene chromosome unknown C12orf50 homolog Neighboring gene RNA 5'-phosphate and 3'-OH ligase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_005852615 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in camera-type eye development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in kidney development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    centrosomal protein of 290 kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PelSin_1.0 Primary Assembly

    Genomic

    1. NW_005852615.1 Reference PelSin_1.0 Primary Assembly

      Range
      1026648..1148216
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025180148.1 → XP_025035933.1  centrosomal protein of 290 kDa isoform X1

      Conserved Domains (2) summary
      pfam16574
      Location:1590 → 1717
      CEP209_CC5; Coiled-coil region of centrosome protein CE290
      cl25732
      Location:146 → 465
      SMC_N; RecF/RecN/SMC N terminal domain

    2. XM_025180150.1 → XP_025035935.1  centrosomal protein of 290 kDa isoform X2

      Conserved Domains (2) summary
      pfam16574
      Location:1590 → 1717
      CEP209_CC5; Coiled-coil region of centrosome protein CE290
      cl25732
      Location:146 → 465
      SMC_N; RecF/RecN/SMC N terminal domain

    3. XM_025180151.1 → XP_025035936.1  centrosomal protein of 290 kDa isoform X2

      Conserved Domains (2) summary
      pfam16574
      Location:1590 → 1717
      CEP209_CC5; Coiled-coil region of centrosome protein CE290
      cl25732
      Location:146 → 465
      SMC_N; RecF/RecN/SMC N terminal domain

    4. XM_006114000.3 → XP_006114062.1  centrosomal protein of 290 kDa isoform X3

      See identical proteins and their annotated locations for XP_006114062.1

      UniProtKB/TrEMBL
      K7F4Q7
      Related
      ENSPSIP00000003017.1, ENSPSIT00000003029.1
      Conserved Domains (3) summary
      COG1196
      Location:1660 → 2446
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:1161 → 1993
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam16574
      Location:1283 → 1410
      CEP209_CC5; Coiled-coil region of centrosome protein CE290

    5. XM_025180149.1 → XP_025035934.1  centrosomal protein of 290 kDa isoform X1

      Conserved Domains (2) summary
      pfam16574
      Location:1590 → 1717
      CEP209_CC5; Coiled-coil region of centrosome protein CE290
      cl25732
      Location:146 → 465
      SMC_N; RecF/RecN/SMC N terminal domain
    Nucleotide Protein
    Heading Accession and Version

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