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    BAZ1B bromodomain adjacent to zinc finger domain 1B [ Alligator mississippiensis (American alligator) ]

    Gene ID: 102575656, updated on 8-May-2024

    Summary

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    Gene symbol
    BAZ1B
    Gene description
    bromodomain adjacent to zinc finger domain 1B
    Locus tag
    Y1Q_0015031
    See related
    EnsemblRapid:ENSAMIG00015007242
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Alligator mississippiensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
    Orthologs
    human mouse all
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    Genomic context

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    See BAZ1B in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2023_09 current rAllMis1 (GCF_030867095.1) 14 NC_081837.1 (29381793..29457459, complement)
    102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017711201.1 (6619376..6694884)

    Chromosome 14 - NC_081837.1Genomic Context describing neighboring genes Neighboring gene FKBP prolyl isomerase family member 6 (inactive) Neighboring gene frizzled class receptor 9 Neighboring gene uncharacterized protein C2orf72 homolog Neighboring gene uncharacterized LOC109284337

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone H2AXY142 kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of WICH complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tyrosine-protein kinase BAZ1B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rAllMis1 Primary Assembly

    Genomic

    1. NC_081837.1 Reference rAllMis1 Primary Assembly

      Range
      29381793..29457459 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014609428.3 → XP_014464914.1  tyrosine-protein kinase BAZ1B

      UniProtKB/TrEMBL
      A0A151N9J8
      Related
      ENSAMIP00015009290.1, ENSAMIT00015013294.1
      Conserved Domains (7) summary
      smart00571
      Location:600 → 664
      DDT; domain in different transcription and chromosome remodeling factors
      cd15628
      Location:1186 → 1231
      PHD_BAZ1B; PHD finger found in bromodomain adjacent to zinc finger domain protein 1B (BAZ1B)
      pfam10537
      Location:23 → 122
      WAC_Acf1_DNA_bd; ATP-utilizing chromatin assembly and remodelling N-terminal
      pfam15612
      Location:721 → 764
      WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
      pfam15613
      Location:897 → 925
      WHIM2; WSTF, HB1, Itc1p, MBD9 motif 2
      pfam15614
      Location:990 → 1026
      WHIM3; WSTF, HB1, Itc1p, MBD9 motif 3
      cl02556
      Location:1347 → 1443
      Bromodomain; Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
    Nucleotide Protein
    Heading Accession and Version

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