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    TBX20 T-box transcription factor 20 [ Erinaceus europaeus (western European hedgehog) ]

    Gene ID: 103113805, updated on 11-Mar-2024

    Summary

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    Gene symbol
    TBX20
    Gene description
    T-box transcription factor 20
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Erinaceus europaeus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Erinaceidae; Erinaceinae; Erinaceus
    Orthologs
    human mouse all
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    Genomic context

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    See TBX20 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_10 current mEriEur2.1 (GCF_950295315.1) 8 NC_080169.1 (4350355..4386090, complement)
    101 previous assembly EriEur2.0 (GCF_000296755.1) Unplaced Scaffold NW_006804126.1 (2064804..2100210, complement)

    Chromosome 8 - NC_080169.1Genomic Context describing neighboring genes Neighboring gene dpy-19 like C-mannosyltransferase 1 Neighboring gene U6 spliceosomal RNA Neighboring gene dpy-19 like 2 Neighboring gene large ribosomal subunit protein uL6-like Neighboring gene HERPUD family member 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell fate specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in heart looping IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vasculogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    T-box transcription factor TBX20
    Names
    T-box 20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_950295315.1-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mEriEur2.1

    Genomic

    1. NC_080169.1 Reference mEriEur2.1

      Range
      4350355..4386090 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007523385.2 → XP_007523447.1  T-box transcription factor TBX20

      UniProtKB/TrEMBL
      A0A1S2ZRI8
      Conserved Domains (1) summary
      cd00182
      Location:99 → 291
      TBOX; T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA ...
    Nucleotide Protein
    Heading Accession and Version

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