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    TRIM13 tripartite motif containing 13 [ Carlito syrichta (Philippine tarsier) ]

    Gene ID: 103265194, updated on 19-Nov-2024

    Summary

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    Gene symbol
    TRIM13
    Gene description
    tripartite motif containing 13
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Carlito syrichta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Tarsiiformes; Tarsiidae; Carlito
    Orthologs
    human mouse all
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    Genomic context

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    See TRIM13 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    101 current Tarsius_syrichta-2.0.1 (GCF_000164805.1) Unplaced Scaffold NW_007249974.1 (338132..350897)

    NW_007249974.1Genomic Context describing neighboring genes Neighboring gene karyopherin subunit alpha 3 Neighboring gene SPRY domain containing 7 Neighboring gene uncharacterized LOC103265196 Neighboring gene potassium channel regulator

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_007249974 Unplaced Scaffold Reference Tarsius_syrichta-2.0.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in innate immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of NF-kappaB transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of canonical NF-kappaB signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of macroautophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase TRIM13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Carlito syrichta Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Tarsius_syrichta-2.0.1 Primary Assembly

    Genomic

    1. NW_007249974.1 Reference Tarsius_syrichta-2.0.1 Primary Assembly

      Range
      338132..350897
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008062901.2 → XP_008061092.1  E3 ubiquitin-protein ligase TRIM13

      UniProtKB/TrEMBL
      A0A1U7U742
      Conserved Domains (3) summary
      smart00336
      Location:90 → 131
      BBOX; B-Box-type zinc finger
      pfam12252
      Location:163 → 234
      SidE; Dot/Icm substrate protein
      cd16762
      Location:5 → 61
      RING-HC_TRIM13_C-V; RING finger, HC subclass, found in tripartite motif-containing protein 13 (TRIM13) and similar proteins

    2. XM_021714931.1 → XP_021570606.1  E3 ubiquitin-protein ligase TRIM13

      UniProtKB/TrEMBL
      A0A1U7U742
      Conserved Domains (3) summary
      smart00336
      Location:90 → 131
      BBOX; B-Box-type zinc finger
      pfam12252
      Location:163 → 234
      SidE; Dot/Icm substrate protein
      cd16762
      Location:5 → 61
      RING-HC_TRIM13_C-V; RING finger, HC subclass, found in tripartite motif-containing protein 13 (TRIM13) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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