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    LOC106174142 tRNA methyltransferase 10 homolog B [ Lingula anatina ]

    Gene ID: 106174142, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC106174142
    Gene description
    tRNA methyltransferase 10 homolog B
    See related
    EnsemblRapid:LOC106174142
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lingula anatina
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Brachiopoda; Linguliformea; Lingulata; Lingulida; Linguloidea; Lingulidae; Lingula
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    Genomic context

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    See LOC106174142 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    101 current LinAna2.0 (GCF_001039355.2) Unplaced Scaffold NW_019775600.1 (220569..227125, complement)
    100 previous assembly LinAna1.0 (GCF_001039355.1) Unplaced Scaffold NW_013580421.1 (226001..232557, complement)

    NW_019775600.1Genomic Context describing neighboring genes Neighboring gene sialin Neighboring gene uncharacterized LOC106174141 Neighboring gene uncharacterized LOC106174145 Neighboring gene 60S acidic ribosomal protein P1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Lingula genome provides insights into brachiopod evolution and the origin of phosphate biomineralization. Luo YJ, et al. Nat Commun, 2015 Sep 18. PMID 26383154, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables tRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitochondrial tRNA 5'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of mitochondrial translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tRNA methyltransferase 10 homolog B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lingula anatina Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference LinAna2.0 Primary Assembly

    Genomic

    1. NW_019775600.1 Reference LinAna2.0 Primary Assembly

      Range
      220569..227125 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013555559.1 → XP_013411013.1  tRNA methyltransferase 10 homolog B

      UniProtKB/TrEMBL
      A0A1S3JKW0
      Related
      XP_013411013.1, XM_013555559.1
      Conserved Domains (1) summary
      cl00407
      Location:219 → 387
      tRNA_m1G_MT; tRNA (Guanine-1)-methyltransferase

    2. XM_013555560.1 → XP_013411014.1  tRNA methyltransferase 10 homolog B

      UniProtKB/TrEMBL
      A0A1S3JKW0
      Related
      XP_013411014.1, XM_013555560.1
      Conserved Domains (1) summary
      cl00407
      Location:219 → 387
      tRNA_m1G_MT; tRNA (Guanine-1)-methyltransferase
    Nucleotide Protein
    Heading Accession and Version

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