U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Spin1 spindlin 1 [ Castor canadensis (American beaver) ]

    Gene ID: 109699133, updated on 14-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    Spin1
    Gene description
    spindlin 1
    See related
    Ensembl:ENSCCNG00000014846
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Castor canadensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Castoridae; Castor
    Also known as
    spindlin-1
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Spin1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    100 current C.can genome v1.0 (GCF_001984765.1) Unplaced Scaffold NW_017872465.1 (23688..59931)

    NW_017872465.1Genomic Context describing neighboring genes Neighboring gene nucleoredoxin like 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_017872465.1 Unplaced Scaffold Reference C.can genome v1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. De Novo Genome and Transcriptome Assembly of the Canadian Beaver (Castor canadensis). Lok S, et al. G3 (Bethesda), 2017 Feb 9. PMID 28087693, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables methylated histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in gamete generation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    spindlin-1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Castor canadensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference C.can genome v1.0

    Genomic

    1. NW_017872465.1 Reference C.can genome v1.0

      Range
      23688..59931
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020183703.1 → XP_020039292.1  spindlin-1 isoform X1

      UniProtKB/TrEMBL
      A0A250YE12
      Related
      ENSCCNP00000014352.1, ENSCCNT00000018827.1
      Conserved Domains (1) summary
      pfam02513
      Location:54 → 102
      Spin-Ssty; Spin/Ssty Family

    2. XM_020183704.1 → XP_020039293.1  spindlin-1 isoform X2

      UniProtKB/TrEMBL
      A0A8C0WRC8
      Related
      ENSCCNP00000014363.1, ENSCCNT00000018840.1
      Conserved Domains (1) summary
      pfam02513
      Location:29 → 77
      Spin-Ssty; Spin/Ssty Family
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.