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    Trim50 tripartite motif containing 50 [ Mus pahari (shrew mouse) ]

    Gene ID: 110313082, updated on 15-Mar-2024

    Summary

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    Gene symbol
    Trim50
    Gene description
    tripartite motif containing 50
    See related
    Ensembl:MGP_PahariEiJ_G0024414
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mus pahari
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Coelomys
    Orthologs
    human mouse all
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    Genomic context

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    See Trim50 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    101 current PAHARI_EIJ_v1.1 (GCF_900095145.1) 23 NC_034612.1 (25534627..25550409)

    Chromosome 23 - NC_034612.1Genomic Context describing neighboring genes Neighboring gene frizzled class receptor 9 Neighboring gene FKBP prolyl isomerase family member 6 (inactive) Neighboring gene nuclear envelope pore membrane protein POM 121-like Neighboring gene NOP2/Sun RNA methyltransferase 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_034612.1 Chromosome 23 Reference PAHARI_EIJ_v1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase TRIM50

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mus pahari Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PAHARI_EIJ_v1.1

    Genomic

    1. NC_034612.1 Reference PAHARI_EIJ_v1.1

      Range
      25534627..25550409
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029533678.1 → XP_029389538.1  E3 ubiquitin-protein ligase TRIM50 isoform X1

      Conserved Domains (3) summary
      cd13743
      Location:285 → 473
      SPRY_PRY_TRIM50; PRY/SPRY domain in tripartite motif-binding protein 50 (TRIM50)
      cd16605
      Location:16 → 60
      RING-HC_TRIM50_like_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein TRIM50, TRIM73, TRIM74 and similar proteins
      cl00034
      Location:90 → 127
      Bbox_SF; B-box-type zinc finger superfamily

    2. XM_021187119.2 → XP_021042778.2  E3 ubiquitin-protein ligase TRIM50 isoform X2

      Related
      MGP_PahariEiJ_P0059541, MGP_PahariEiJ_T0059541.1
      Conserved Domains (3) summary
      cd13743
      Location:284 → 472
      SPRY_PRY_TRIM50; PRY/SPRY domain in tripartite motif-binding protein 50 (TRIM50)
      cd16605
      Location:16 → 60
      RING-HC_TRIM50_like_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein TRIM50, TRIM73, TRIM74 and similar proteins
      cl00034
      Location:90 → 127
      Bbox_SF; B-box-type zinc finger superfamily

    3. XM_021187118.2 → XP_021042777.2  E3 ubiquitin-protein ligase TRIM50 isoform X1

      Related
      MGP_PahariEiJ_P0059540, MGP_PahariEiJ_T0059540.1
      Conserved Domains (3) summary
      cd13743
      Location:285 → 473
      SPRY_PRY_TRIM50; PRY/SPRY domain in tripartite motif-binding protein 50 (TRIM50)
      cd16605
      Location:16 → 60
      RING-HC_TRIM50_like_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein TRIM50, TRIM73, TRIM74 and similar proteins
      cl00034
      Location:90 → 127
      Bbox_SF; B-box-type zinc finger superfamily
    Nucleotide Protein
    Heading Accession and Version

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