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    TRIM13 tripartite motif containing 13 [ Desmodus rotundus (common vampire bat) ]

    Gene ID: 112313347, updated on 3-Dec-2024

    Summary

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    Gene symbol
    TRIM13
    Gene description
    tripartite motif containing 13
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Desmodus rotundus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Phyllostomidae; Desmodontinae; Desmodus
    Orthologs
    human mouse all
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    Genomic context

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    See TRIM13 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_02 current HLdesRot8A (GCF_022682495.1) 13 NC_071399.1 (45951149..45963667, complement)
    101 previous assembly ASM294091v2 (GCF_002940915.1) Unplaced Scaffold NW_020090504.1 (49627895..49640429)

    Chromosome 13 - NC_071399.1Genomic Context describing neighboring genes Neighboring gene suppressor of SWI4 1 homolog Neighboring gene potassium channel regulator Neighboring gene tubulin alpha-1A chain-like Neighboring gene SPRY domain containing 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in innate immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of NF-kappaB transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of canonical NF-kappaB signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of macroautophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase TRIM13
    Names
    Putative e3 ubiquitin-protein ligase trim13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_022682495.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference HLdesRot8A Primary Assembly

    Genomic

    1. NC_071399.1 Reference HLdesRot8A Primary Assembly

      Range
      45951149..45963667 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_045202831.2 → XP_045058766.1  E3 ubiquitin-protein ligase TRIM13

      UniProtKB/TrEMBL
      K9J2M0
      Conserved Domains (2) summary
      cd16762
      Location:5 → 61
      RING-HC_TRIM13_C-V; RING finger, HC subclass, found in tripartite motif-containing protein 13 (TRIM13) and similar proteins
      cd19767
      Location:92 → 133
      Bbox2_TRIM13_C-XI; B-box-type 2 zinc finger found in tripartite motif-containing protein 13 (TRIM13) and similar proteins

    2. XM_045202822.2 → XP_045058757.1  E3 ubiquitin-protein ligase TRIM13

      UniProtKB/TrEMBL
      K9J2M0
      Conserved Domains (2) summary
      cd16762
      Location:5 → 61
      RING-HC_TRIM13_C-V; RING finger, HC subclass, found in tripartite motif-containing protein 13 (TRIM13) and similar proteins
      cd19767
      Location:92 → 133
      Bbox2_TRIM13_C-XI; B-box-type 2 zinc finger found in tripartite motif-containing protein 13 (TRIM13) and similar proteins

    3. XM_053916748.1 → XP_053772723.1  E3 ubiquitin-protein ligase TRIM13

      UniProtKB/TrEMBL
      K9J2M0

    4. XM_053916749.1 → XP_053772724.1  E3 ubiquitin-protein ligase TRIM13

      UniProtKB/TrEMBL
      K9J2M0

    5. XM_024569895.3 → XP_024425663.1  E3 ubiquitin-protein ligase TRIM13

      UniProtKB/TrEMBL
      K9J2M0
      Conserved Domains (2) summary
      cd16762
      Location:5 → 61
      RING-HC_TRIM13_C-V; RING finger, HC subclass, found in tripartite motif-containing protein 13 (TRIM13) and similar proteins
      cd19767
      Location:92 → 133
      Bbox2_TRIM13_C-XI; B-box-type 2 zinc finger found in tripartite motif-containing protein 13 (TRIM13) and similar proteins

    6. XM_024569902.3 → XP_024425670.1  E3 ubiquitin-protein ligase TRIM13

      UniProtKB/TrEMBL
      K9J2M0
      Conserved Domains (2) summary
      cd16762
      Location:5 → 61
      RING-HC_TRIM13_C-V; RING finger, HC subclass, found in tripartite motif-containing protein 13 (TRIM13) and similar proteins
      cd19767
      Location:92 → 133
      Bbox2_TRIM13_C-XI; B-box-type 2 zinc finger found in tripartite motif-containing protein 13 (TRIM13) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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