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    TRIM50 tripartite motif containing 50 [ Podarcis muralis (Common wall lizard) ]

    Gene ID: 114585282, updated on 15-Mar-2024

    Summary

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    Gene symbol
    TRIM50
    Gene description
    tripartite motif containing 50
    See related
    Ensembl:ENSPMRG00000016662
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Podarcis muralis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Podarcis
    Orthologs
    human mouse all
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    Genomic context

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    See TRIM50 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    100 current PodMur_1.0 (GCF_004329235.1) 15 NC_041326.1 (16456475..16465549, complement)

    Chromosome 15 - NC_041326.1Genomic Context describing neighboring genes Neighboring gene frizzled class receptor 9 Neighboring gene uncharacterized LOC114585286 Neighboring gene FKBP prolyl isomerase family member 6 (inactive) Neighboring gene NOP2/Sun RNA methyltransferase 5 Neighboring gene POM121 transmembrane nucleoporin

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_041326.1 Chromosome 15 Reference PodMur_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase TRIM50

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Podarcis muralis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PodMur_1.0 Primary Assembly

    Genomic

    1. NC_041326.1 Reference PodMur_1.0 Primary Assembly

      Range
      16456475..16465549 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028707799.1 → XP_028563632.1  E3 ubiquitin-protein ligase TRIM50

      UniProtKB/TrEMBL
      A0A670JQI5
      Related
      ENSPMRP00000025729.1, ENSPMRT00000027310.1
      Conserved Domains (4) summary
      cd00021
      Location:91 → 127
      BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
      TIGR02169
      Location:144 → 245
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
      cd13743
      Location:285 → 473
      SPRY_PRY_TRIM50; PRY/SPRY domain in tripartite motif-binding protein 50 (TRIM50)
      cd16605
      Location:14 → 58
      RING-HC_TRIM50_like_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein TRIM50, TRIM73, TRIM74 and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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