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    TRIM50 tripartite motif containing 50 [ Chelonoidis abingdonii (Abingdon island giant tortoise) ]

    Gene ID: 116830272, updated on 18-Mar-2024

    Summary

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    Gene symbol
    TRIM50
    Gene description
    tripartite motif containing 50
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Chelonoidis abingdonii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Testudinidae; Chelonoidis
    Orthologs
    human mouse all
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    Genomic context

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    See TRIM50 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    100 current ASM359739v1 (GCF_003597395.1) Unplaced Scaffold NW_022642700.1 (4708475..4723938, complement)

    NW_022642700.1Genomic Context describing neighboring genes Neighboring gene maestro heat-like repeat-containing protein family member 2A Neighboring gene maestro heat-like repeat-containing protein family member 2A Neighboring gene maestro heat-like repeat-containing protein family member 2A Neighboring gene FKBP prolyl isomerase family member 6 (inactive) Neighboring gene A disintegrin and metalloproteinase with thrombospondin motifs 2-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_022642700 Unplaced Scaffold Reference ASM359739v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase TRIM50

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Chelonoidis abingdonii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM359739v1

    Genomic

    1. NW_022642700.1 Reference ASM359739v1

      Range
      4708475..4723938 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032789690.1 → XP_032645581.1  E3 ubiquitin-protein ligase TRIM50

      UniProtKB/TrEMBL
      A0A8C0GAW1
      Conserved Domains (3) summary
      cd16605
      Location:14 → 58
      RING-HC_TRIM50_like_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein TRIM50, TRIM73, TRIM74 and similar proteins
      cd19787
      Location:89 → 127
      Bbox2_TRIM50-like; B-box-type 2 zinc finger found in tripartite motif-containing protein TRIM50, TRIM73, TRIM74 and similar proteins
      cl02614
      Location:285 → 473
      SPRY; SPRY domain
    Nucleotide Protein
    Heading Accession and Version

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