U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC116908309 zinc finger protein OZF-like [ Rattus rattus (black rat) ]

    Gene ID: 116908309, updated on 23-Oct-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC116908309
    Gene description
    zinc finger protein OZF-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus rattus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC116908309 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current Rrattus_CSIRO_v1 (GCF_011064425.1) 8 NC_046161.1 (16629754..16660050)

    Chromosome 8 - NC_046161.1Genomic Context describing neighboring genes Neighboring gene putative gustatory receptor clone PTE01 Neighboring gene olfactory receptor 18-like Neighboring gene 40S ribosomal protein SA-like Neighboring gene zinc finger protein 426 Neighboring gene U6 spliceosomal RNA Neighboring gene U1 spliceosomal RNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_046161.1 Chromosome 8 Reference Rrattus_CSIRO_v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    zinc finger protein 426-like; zinc finger protein OZF-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Rattus rattus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rrattus_CSIRO_v1 Primary Assembly

    Genomic

    1. NC_046161.1 Reference Rrattus_CSIRO_v1 Primary Assembly

      Range
      16629754..16660050
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032911590.1 → XP_032767481.1  zinc finger protein 426-like isoform X1

      Conserved Domains (4) summary
      smart00349
      Location:41 → 97
      KRAB; krueppel associated box
      COG5048
      Location:397 → 588
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:429 → 449
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:371 → 393
      zf-C2H2; Zinc finger, C2H2 type

    2. XM_032911589.1 → XP_032767480.1  zinc finger protein 426-like isoform X1

      Conserved Domains (4) summary
      smart00349
      Location:41 → 97
      KRAB; krueppel associated box
      COG5048
      Location:397 → 588
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:429 → 449
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:371 → 393
      zf-C2H2; Zinc finger, C2H2 type

    3. XM_032911592.1 → XP_032767483.1  zinc finger protein 426-like isoform X1

      Conserved Domains (4) summary
      smart00349
      Location:41 → 97
      KRAB; krueppel associated box
      COG5048
      Location:397 → 588
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:429 → 449
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:371 → 393
      zf-C2H2; Zinc finger, C2H2 type

    4. XM_032911593.1 → XP_032767484.1  zinc finger protein OZF-like isoform X2

      Conserved Domains (4) summary
      COG5048
      Location:328 → 519
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:360 → 380
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:302 → 324
      zf-C2H2; Zinc finger, C2H2 type
      cl02581
      Location:1 → 28
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    5. XM_032911591.1 → XP_032767482.1  zinc finger protein 426-like isoform X1

      Conserved Domains (4) summary
      smart00349
      Location:41 → 97
      KRAB; krueppel associated box
      COG5048
      Location:397 → 588
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:429 → 449
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:371 → 393
      zf-C2H2; Zinc finger, C2H2 type
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases