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    Ctse cathepsin E [ Rattus rattus (black rat) ]

    Gene ID: 116911539, updated on 18-Mar-2024

    Summary

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    Gene symbol
    Ctse
    Gene description
    cathepsin E
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus rattus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Orthologs
    human mouse all
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    Genomic context

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    See Ctse in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current Rrattus_CSIRO_v1 (GCF_011064425.1) 10 NC_046163.1 (4162770..4185596, complement)

    Chromosome 10 - NC_046163.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 26 member 9 Neighboring gene RAB7B, member RAS oncogene family Neighboring gene 60S ribosomal protein L36a-like Neighboring gene arginine vasopressin receptor 1B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_046163.1 Chromosome 10 Reference Rrattus_CSIRO_v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation and sequencing of two cDNA clones encoding rat spleen cathepsin E and analysis of the activation of purified procathepsin E. Okamoto K, et al. Arch Biochem Biophys, 1995 Sep 10. PMID 7574663
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables aspartic-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cathepsin E

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Rattus rattus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rrattus_CSIRO_v1 Primary Assembly

    Genomic

    1. NC_046163.1 Reference Rrattus_CSIRO_v1 Primary Assembly

      Range
      4162770..4185596 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032915527.1 → XP_032771418.1  cathepsin E

      Conserved Domains (2) summary
      pfam07966
      Location:23 → 51
      A1_Propeptide; A1 Propeptide
      cl11403
      Location:80 → 395
      pepsin_retropepsin_like; Cellular and retroviral pepsin-like aspartate proteases
    Nucleotide Protein
    Heading Accession and Version

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