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    prickle2b prickle homolog 2b [ Colossoma macropomum (tambaqui) ]

    Gene ID: 118799495, updated on 20-Mar-2024

    Summary

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    Gene symbol
    prickle2b
    Gene description
    prickle homolog 2b
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Colossoma macropomum
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Colossoma
    Orthologs
    human zebrafish all
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    Genomic context

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    See prickle2b in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current Colossoma_macropomum (GCF_904425465.1) Unplaced Scaffold NW_023494810.1 (27498420..27596814, complement)

    NW_023494810.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 2, facilitated glucose transporter member 11-like Neighboring gene solute carrier family 2, facilitated glucose transporter member 11-like Neighboring gene U2 spliceosomal RNA Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif, 9 Neighboring gene rhodopsin, like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_023494810 Unplaced Scaffold Reference Colossoma_macropomum

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    prickle-like protein 2b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Colossoma macropomum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Colossoma_macropomum

    Genomic

    1. NW_023494810.1 Reference Colossoma_macropomum

      Range
      27498420..27596814 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036559416.1 → XP_036415309.1  prickle-like protein 2b

      Conserved Domains (4) summary
      cd09415
      Location:126 → 184
      LIM1_Prickle; The first LIM domain of Prickle
      cd09418
      Location:189 → 244
      LIM2_Prickle; The second LIM domain of Prickle
      cd09420
      Location:249 → 307
      LIM3_Prickle; The third LIM domain of Prickle
      cd09827
      Location:22 → 118
      PET_Prickle; The PET domain of Prickle

    2. XM_036559415.1 → XP_036415308.1  prickle-like protein 2b

      Conserved Domains (4) summary
      cd09415
      Location:126 → 184
      LIM1_Prickle; The first LIM domain of Prickle
      cd09418
      Location:189 → 244
      LIM2_Prickle; The second LIM domain of Prickle
      cd09420
      Location:249 → 307
      LIM3_Prickle; The third LIM domain of Prickle
      cd09827
      Location:22 → 118
      PET_Prickle; The PET domain of Prickle
    Nucleotide Protein
    Heading Accession and Version

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