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    TBX20 T-box transcription factor 20 [ Ochotona curzoniae (black-lipped pika) ]

    Gene ID: 121145771, updated on 22-Mar-2024

    Summary

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    Gene symbol
    TBX20
    Gene description
    T-box transcription factor 20
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ochotona curzoniae
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Ochotonidae; Ochotona
    Orthologs
    human mouse all
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    Genomic context

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    See TBX20 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current NIBS_Ocur_1.0 (GCF_017591425.1) Unplaced Scaffold NW_024467114.1 (20660228..20700526, complement)

    NW_024467114.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121145808 Neighboring gene dpy-19 like 2 Neighboring gene dpy-19 like C-mannosyltransferase 1 Neighboring gene neuropeptide S receptor 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024467114 Unplaced Scaffold Reference NIBS_Ocur_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell fate specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in heart looping IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vasculogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    T-box transcription factor TBX20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ochotona curzoniae Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NIBS_Ocur_1.0 Primary Assembly

    Genomic

    1. NW_024467114.1 Reference NIBS_Ocur_1.0 Primary Assembly

      Range
      20660228..20700526 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040964869.1 → XP_040820803.1  T-box transcription factor TBX20

      Conserved Domains (2) summary
      smart00425
      Location:100 → 291
      TBOX; Domain first found in the mice T locus (Brachyury) protein
      pfam05872
      Location:357 → 409
      DUF853; Bacterial protein of unknown function (DUF853)
    Nucleotide Protein
    Heading Accession and Version

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