Glt6d1 glycosyltransferase 6 domain containing 1 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Glt6d1provided by RGD
Official Full Name: glycosyltransferase 6 domain containing 1provided by RGD
Primary source: RGD:1311348
See related: EnsemblRapid:ENSRNOG00000027900 AllianceGenome:RGD:1311348
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: GT6m7; Gltdc1
Summary: Predicted to enable glycosyltransferase activity. Predicted to be involved in lipid glycosylation. Predicted to be located in membrane. Predicted to be active in Golgi apparatus and vesicle. Orthologous to human GLT6D1 (glycosyltransferase 6 domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Restricted expression toward (RPKM 169.2) See more
Orthologs: human mouse all
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Genomic context

Location:: 3p13

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	3	NC_086021.1 (29026023..29037010, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	3	NC_051338.1 (8627793..8638537, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	3	NC_005102.4 (3255645..3266276, complement)

Chromosome 3 - NC_086021.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables glycosyltransferase activity	IBA Inferred from Biological aspect of Ancestor more info
enables hexosyltransferase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in carbohydrate metabolic process	IEA Inferred from Electronic Annotation more info
involved_in lipid glycosylation	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in Golgi apparatus	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info
is_active_in vesicle	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: glycosyltransferase 6 domain-containing protein 1

Names: galactosyltransferase family 6 domain containing 1

NP_001100029.2

EC 2.4.1.-

XP_006233733.1

EC 2.4.1.-

XP_038960647.1

EC 2.4.1.-

XP_038960648.1

EC 2.4.1.-

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001106559.2 → NP_001100029.2 glycosyltransferase 6 domain-containing protein 1

See identical proteins and their annotated locations for NP_001100029.2

Status: VALIDATED

Source sequence(s)

JAXUCZ010000003

UniProtKB/Swiss-Prot

D3ZNQ3

Related

ENSRNOP00000034274.4, ENSRNOT00000034538.7

Conserved Domains (1) summary

cl11394
Location:45 → 305

Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086021.1 Reference GRCr8

Range

29026023..29037010 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_006233671.5 → XP_006233733.1 glycosyltransferase 6 domain-containing protein 1 isoform X1

See identical proteins and their annotated locations for XP_006233733.1

UniProtKB/Swiss-Prot

D3ZNQ3

Conserved Domains (1) summary

cl11394
Location:45 → 305

Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
XM_039104719.2 → XP_038960647.1 glycosyltransferase 6 domain-containing protein 1 isoform X2

Related

ENSRNOP00000110542.1, ENSRNOT00000163666.1

Conserved Domains (1) summary

cl11394
Location:29 → 289

Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
XM_039104720.2 → XP_038960648.1 glycosyltransferase 6 domain-containing protein 1 isoform X3

Conserved Domains (1) summary

cl11394
Location:1 → 199

Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold