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    Gtse1 G-2 and S-phase expressed 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 300126, updated on 9-Dec-2024

    Summary

    Official Symbol
    Gtse1provided by RGD
    Official Full Name
    G-2 and S-phase expressed 1provided by RGD
    Primary source
    RGD:1563164
    See related
    EnsemblRapid:ENSRNOG00000016148 AllianceGenome:RGD:1563164
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1563164
    Summary
    Predicted to enable microtubule binding activity. Predicted to be active in cytoplasmic microtubule. Orthologous to human GTSE1 (G2 and S-phase expressed 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Thymus (RPKM 62.6), Spleen (RPKM 37.9) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Gtse1 in Genome Data Viewer
    Location:
    7q34
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (118829793..118846662)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (116949997..116966826)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (126736416..126753221)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene polycystin family receptor for egg jelly Neighboring gene tetratricopeptide repeat domain 38 Neighboring gene tRNA mitochondrial 2-thiouridylase Neighboring gene cadherin, EGF LAG seven-pass G-type receptor 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Pathways from PubChem

    General gene information

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables microtubule binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in cytoplasmic microtubule IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytoplasmic microtubule ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in microtubule cytoskeleton IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    G2 and S phase-expressed protein 1
    Names
    G two S phase expressed protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001130500.1NP_001123972.1  G2 and S phase-expressed protein 1

      See identical proteins and their annotated locations for NP_001123972.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473950
      UniProtKB/TrEMBL
      A0A8I6GJ39, A6HTF6, D3ZPA8
      Related
      ENSRNOP00000090727.2, ENSRNOT00000103791.2
      Conserved Domains (1) summary
      pfam15259
      Location:29172
      GTSE1_N; G-2 and S-phase expressed 1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      118829793..118846662
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006242160.5XP_006242222.1  G2 and S phase-expressed protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006242222.1

      UniProtKB/TrEMBL
      A0A8I6GJ39, A6HTF6, D3ZPA8
      Related
      ENSRNOP00000022012.5, ENSRNOT00000022012.9
      Conserved Domains (1) summary
      pfam15259
      Location:29172
      GTSE1_N; G-2 and S-phase expressed 1