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    Rsph14 radial spoke head 14 homolog [ Rattus norvegicus (Norway rat) ]

    Gene ID: 365552, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Rsph14provided by RGD
    Official Full Name
    radial spoke head 14 homologprovided by RGD
    Primary source
    RGD:1305601
    See related
    EnsemblRapid:ENSRNOG00000001315 AllianceGenome:RGD:1305601
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Rtdr1
    Summary
    Predicted to be part of radial spoke. Orthologous to human RSPH14 (radial spoke head 14 homolog). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 24.9), Lung (RPKM 13.2) and 1 other tissue See more
    Orthologs
    human mouse all
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    Genomic context

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    See Rsph14 in Genome Data Viewer
    Location:
    20p12
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (13626707..13702817)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (13627495..13703447)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (14576983..14653236)

    Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene BCR activator of RhoGEF and GTPase Neighboring gene RAB36, member RAS oncogene family Neighboring gene G protein subunit alpha z Neighboring gene ribosomal protein L9, pseudogene 20 Neighboring gene uncharacterized LOC120098888

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    part_of radial spoke ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    radial spoke head 14 homolog
    Names
    rhabdoid tumor deletion region gene 1
    rhabdoid tumor deletion region protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001127557.2 → NP_001121029.1  radial spoke head 14 homolog isoform 1

      See identical proteins and their annotated locations for NP_001121029.1

      Status: PROVISIONAL

      Source sequence(s)
      BC162057
      UniProtKB/TrEMBL
      A0A8J8YHA7, B1WC99, F1LNB6
      Related
      ENSRNOP00000104765.1, ENSRNOT00000125124.1
      Conserved Domains (1) summary
      sd00044
      Location:27 → 55
      HEAT; HEAT repeat [structural motif]

    2. NM_001401509.1 → NP_001388438.1  radial spoke head 14 homolog isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000020
      UniProtKB/TrEMBL
      A0A0G2K0V7, A6JKM1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086038.1 Reference GRCr8

      Range
      13626707..13702817
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063279329.1 → XP_063135399.1  radial spoke head 14 homolog isoform X2

    2. XM_006256340.5 → XP_006256402.1  radial spoke head 14 homolog isoform X1

      See identical proteins and their annotated locations for XP_006256402.1

      UniProtKB/TrEMBL
      A0A0G2K0V7, A6JKM1
      Conserved Domains (3) summary
      cd00020
      Location:224 → 337
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
      sd00044
      Location:151 → 175
      HEAT; HEAT repeat [structural motif]
      sd00043
      Location:190 → 215
      ARM; armadillo repeat [structural motif]
    Nucleotide Protein Strain
    Heading Accession and Version

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