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    SYMPK symplekin scaffold protein [ Pan troglodytes (chimpanzee) ]

    Gene ID: 456142, updated on 3-Dec-2024

    Summary

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    Official Symbol
    SYMPKprovided by VGNC
    Official Full Name
    symplekin scaffold proteinprovided by VGNC
    Primary source
    VGNC:VGNC:2240
    Locus tag
    CK820_G0042182
    See related
    Ensembl:ENSPTRG00000011169
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human mouse all
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    Genomic context

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    See SYMPK in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 20 NC_072418.2 (48777370..48826319, complement)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 19 NC_072417.1 (48777392..48825465, complement)

    Chromosome 20 - NC_072418.2Genomic Context describing neighboring genes Neighboring gene DM1 locus, WD repeat containing Neighboring gene radial spoke head 6 homolog A Neighboring gene forkhead box A3 Neighboring gene interferon regulatory factor 2 binding protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    part_of mRNA cleavage and polyadenylation specificity factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    symplekin; symplekin scaffold protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072418.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      48777370..48826319 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009435848.5 → XP_009434123.2  symplekin isoform X1

      UniProtKB/TrEMBL
      A0A2I3RIF7

    2. XM_024351465.3 → XP_024207233.1  symplekin isoform X2

      UniProtKB/TrEMBL
      A0A2J8K1A8, A0A6D2XDF2, H2QGM1, K7APQ6
      Conserved Domains (2) summary
      pfam11935
      Location:122 → 337
      DUF3453; Domain of unknown function (DUF3453)
      pfam12295
      Location:887 → 1068
      Symplekin_C; Symplekin tight junction protein C terminal
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials