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    TBX20 T-box transcription factor 20 [ Canis lupus familiaris (dog) ]

    Gene ID: 482396, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TBX20provided by VGNC
    Official Full Name
    T-box transcription factor 20provided by VGNC
    Primary source
    VGNC:VGNC:47172
    See related
    Ensembl:ENSCAFG00845028609
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See TBX20 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 14 NC_051818.1 (46832241..46887482, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 14 NC_006596.4 (46333468..46388693, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 14 NC_049235.1 (46994716..47045430, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 14 NC_049274.1 (46939599..46994783, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 14 NC_049755.1 (46616244..46671623, complement)

    Chromosome 14 - NC_051818.1Genomic Context describing neighboring genes Neighboring gene dpy-19 like C-mannosyltransferase 1 Neighboring gene uncharacterized LOC119866409 Neighboring gene dpy-19 like 2 Neighboring gene elongation factor 1-alpha 1-like Neighboring gene uncharacterized LOC111098821 Neighboring gene uncharacterized LOC119865649

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell fate specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in heart looping IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vasculogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: T-box transcription factor TBX20; T-box transcription factor TBX20
    Names
    T-box 20
    T-box transcription factor TBX20-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051818.1 Reference ROS_Cfam_1.0

      Range
      46832241..46887482 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038686946.1 → XP_038542874.1  T-box transcription factor TBX20 isoform X1

      UniProtKB/TrEMBL
      A0A8C0JZH2, A0A8C0NFR0, A0A8C0S8Q8, A0A8I3Q4U5
      Related
      ENSCAFP00845039605.1, ENSCAFT00845050513.1
      Conserved Domains (2) summary
      pfam05872
      Location:322 → 410
      DUF853; Bacterial protein of unknown function (DUF853)
      cd20193
      Location:101 → 290
      T-box_TBX20-like; DNA-binding domain of T-box transcription factor 20 and related T-box proteins

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049274.1 Alternate UMICH_Zoey_3.1

      Range
      46939599..46994783 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038495046.1 → XP_038350974.1  T-box transcription factor TBX20 isoform X2

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049755.1 Alternate UNSW_CanFamBas_1.0

      Range
      46616244..46671623 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038621260.1 → XP_038477188.1  T-box transcription factor TBX20 isoform X1

      Conserved Domains (2) summary
      pfam05872
      Location:322 → 410
      DUF853; Bacterial protein of unknown function (DUF853)
      cd20193
      Location:101 → 290
      T-box_TBX20-like; DNA-binding domain of T-box transcription factor 20 and related T-box proteins

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049235.1 Alternate UU_Cfam_GSD_1.0

      Range
      46994716..47045430 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038557325.1 → XP_038413253.1  LOW QUALITY PROTEIN: T-box transcription factor TBX20 isoform X1

      UniProtKB/TrEMBL
      A0A8C0S8Q8

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006596.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      46333468..46388693 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_539513.7 → XP_539513.4  T-box transcription factor TBX20 isoform X1

      UniProtKB/TrEMBL
      A0A8C0JZH2, A0A8C0NFR0, A0A8C0S8Q8, A0A8I3Q4U5
      Conserved Domains (2) summary
      pfam05872
      Location:322 → 410
      DUF853; Bacterial protein of unknown function (DUF853)
      cd20193
      Location:101 → 290
      T-box_TBX20-like; DNA-binding domain of T-box transcription factor 20 and related T-box proteins
    Nucleotide Protein
    Heading Accession and Version

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