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    Ggta1l1 glycoprotein, alpha-galactosyltransferase 1-like 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 652927, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Ggta1l1provided by RGD
    Official Full Name
    glycoprotein, alpha-galactosyltransferase 1-like 1provided by RGD
    Primary source
    RGD:1565200
    See related
    EnsemblRapid:ENSRNOG00000042373 AllianceGenome:RGD:1565200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Ggta1; Glt6d1
    Summary
    Predicted to enable glycosyltransferase activity. Predicted to be involved in lipid glycosylation. Predicted to be located in Golgi cisterna membrane. Predicted to be active in Golgi apparatus and vesicle. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 28.2) See more
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    Genomic context

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    See Ggta1l1 in Genome Data Viewer
    Location:
    3p11
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (39082149..39099154, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (18684676..18701674, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (14555916..14573016, complement)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene gelsolin Neighboring gene ribosomal protein S29, pseudogene 18 Neighboring gene stomatin Neighboring gene uncharacterized LOC102548933 Neighboring gene RIKEN cDNA 4930402F06 gene like Neighboring gene spermidine synthase-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, et al. Nature, 2004 Apr 1. PMID 15057822
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables N-acetyllactosaminide 3-alpha-galactosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables glycosyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in lipid glycosylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in Golgi cisterna membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in vesicle IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    N-acetyllactosaminide alpha-1,3-galactosyltransferase-like 1
    Names
    ABO-family member 5
    ABO-family member protein 5
    N-acetyllactosaminide alpha-1,3-galactosyltransferase
    UDP-galactose:beta-D-galactosyl-1,4-N-acetyl-D-glucosaminide alpha-1,3-galactosyltransferase
    galactosyltransferase
    glycosyltransferase 6 domain-containing protein 1
    NP_001032672.2
    XP_006234108.1
    XP_017447521.1
    XP_038961749.1
    XP_038961750.1
    XP_038961751.1
    XP_063140600.1
    XP_063140601.1
    XP_063140602.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001037583.2 → NP_001032672.2  N-acetyllactosaminide alpha-1,3-galactosyltransferase-like 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/Swiss-Prot
      G3V9Q9
      Related
      ENSRNOP00000056765.1, ENSRNOT00000060013.3

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      39082149..39099154 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006234046.5 → XP_006234108.1  N-acetyllactosaminide alpha-1,3-galactosyltransferase-like 1 isoform X1

      See identical proteins and their annotated locations for XP_006234108.1

      UniProtKB/Swiss-Prot
      G3V9Q9
      Conserved Domains (1) summary
      cl11394
      Location:55 → 321
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

    2. XM_063284532.1 → XP_063140602.1  N-acetyllactosaminide alpha-1,3-galactosyltransferase-like 1 isoform X4

    3. XM_039105822.2 → XP_038961750.1  N-acetyllactosaminide alpha-1,3-galactosyltransferase-like 1 isoform X2

      Conserved Domains (1) summary
      cl11394
      Location:24 → 290
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

    4. XM_017592032.3 → XP_017447521.1  N-acetyllactosaminide alpha-1,3-galactosyltransferase-like 1 isoform X2

      Conserved Domains (1) summary
      cl11394
      Location:24 → 290
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

    5. XM_063284530.1 → XP_063140600.1  N-acetyllactosaminide alpha-1,3-galactosyltransferase-like 1 isoform X3

    6. XM_063284531.1 → XP_063140601.1  N-acetyllactosaminide alpha-1,3-galactosyltransferase-like 1 isoform X4

    7. XM_039105823.2 → XP_038961751.1  N-acetyllactosaminide alpha-1,3-galactosyltransferase-like 1 isoform X2

      Conserved Domains (1) summary
      cl11394
      Location:24 → 290
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

    8. XM_039105821.2 → XP_038961749.1  N-acetyllactosaminide alpha-1,3-galactosyltransferase-like 1 isoform X2

      Conserved Domains (1) summary
      cl11394
      Location:24 → 290
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    G3V9Q9.1 GenPept UniProtKB/Swiss-Prot:G3V9Q9

    Gene LinkOut

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