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    LOC7494493 phosphoinositide phospholipase C 6 [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7494493, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC7494493
    Gene description
    phosphoinositide phospholipase C 6
    Locus tag
    POPTR_008G068300v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC7494493 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 8 NC_037292.2 (4135837..4140769)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 8 NC_037292.1 (4159157..4164020)

    Chromosome 8 - NC_037292.2Genomic Context describing neighboring genes Neighboring gene DNA replication complex GINS protein PSF3 Neighboring gene protein EARLY FLOWERING 4 Neighboring gene phosphoinositide phospholipase C 2 Neighboring gene NF-X1-type zinc finger protein NFXL2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol phospholipase C activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phosphatidylinositol-mediated signaling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphoinositide phospholipase C 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037292.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      4135837..4140769
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024606751.2 → XP_024462519.1  phosphoinositide phospholipase C 6 isoform X2

      UniProtKB/TrEMBL
      A0A3N7FEB0, A0A3N7GS64
      Conserved Domains (1) summary
      cl27705
      Location:1 → 534
      PI-PLC-Y; Phosphatidylinositol-specific phospholipase C, Y domain

    2. XM_002311186.4 → XP_002311222.2  phosphoinositide phospholipase C 6 isoform X1

      UniProtKB/TrEMBL
      A0A2K1ZD26, A0A3N7FEB0
      Conserved Domains (1) summary
      PLN02952
      Location:1 → 614
      PLN02952; phosphoinositide phospholipase C
    Nucleotide Protein
    Heading Accession and Version

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