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    LOC9315913 phosphoinositide phospholipase C 6 [ Arabidopsis lyrata subsp. lyrata ]

    Gene ID: 9315913, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC9315913
    Gene description
    phosphoinositide phospholipase C 6
    Locus tag
    ARALYDRAFT_903282
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See LOC9315913 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302552.1 (19545519..19548590)

    NW_003302552.1Genomic Context describing neighboring genes Neighboring gene protein yippee-like Neighboring gene uncharacterized LOC9315912 Neighboring gene putative B3 domain-containing protein At4g03160 Neighboring gene elongation factor 1-delta 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003302552 Unplaced Scaffold Reference v.1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol phospholipase C activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phosphatidylinositol-mediated signaling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphoinositide phospholipase C 6
    Names
    phosphoinositide-specific phospholipase C family protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v.1.0 Primary Assembly

    Genomic

    1. NW_003302552.1 Reference v.1.0 Primary Assembly

      Range
      19545519..19548590
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002879800.2 → XP_002879846.1  phosphoinositide phospholipase C 6

      See identical proteins and their annotated locations for XP_002879846.1

      UniProtKB/TrEMBL
      D7LEF8
      Conserved Domains (4) summary
      cd00275
      Location:488 → 618
      C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
      cd08599
      Location:141 → 457
      PI-PLCc_plant; Catalytic domain of plant phosphatidylinositide-specific phospholipases C
      PLN02952
      Location:1 → 618
      PLN02952; phosphoinositide phospholipase C
      pfam09279
      Location:72 → 141
      EF-hand_like; Phosphoinositide-specific phospholipase C, efhand-like
    Nucleotide Protein
    Heading Accession and Version

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