SNP Links for Gene (Select 100033447) - SNP

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Links from Gene

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Select item 14909488011.

rs1490948801 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 15:25185539 (GRCh38)
15:25430686 (GRCh37)
Canonical SPDI:: NC_000015.10:25185538:C:A,NC_000015.10:25185538:C:T
Gene:: SNORD115-9 (Varview), SNORD115-10 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000015.10:g.25185539C>A, NC_000015.10:g.25185539C>T, NC_000015.9:g.25430686C>A, NC_000015.9:g.25430686C>T, NG_002690.1:g.404630C>A, NG_002690.1:g.404630C>T, NR_146177.1:n.11928C>A, NR_146177.1:n.11928C>T

Select item 14901326362.

rs1490132636 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25185815 (GRCh38)
15:25430962 (GRCh37)
Canonical SPDI:: NC_000015.10:25185814:A:G
Gene:: SNORD115-9 (Varview), SNORD115-10 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,500B_downstream_variant,intron_variant,downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25185815A>G, NC_000015.9:g.25430962A>G, NG_002690.1:g.404906A>G

Select item 14886215373.

rs1488621537 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 15:25187156 (GRCh38)
15:25432303 (GRCh37)
Canonical SPDI:: NC_000015.10:25187155:C:A
Gene:: SNORD115-10 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000054/1 (ALFA)
A=0.000029/4 (GnomAD)
A=0.000042/11 (TOPMED)
A=0.000223/1 (Estonian)
HGVS:: NC_000015.10:g.25187156C>A, NC_000015.9:g.25432303C>A, NG_002690.1:g.406247C>A

Select item 14877234264.

rs1487723426 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 15:25186163 (GRCh38)
15:25431310 (GRCh37)
Canonical SPDI:: NC_000015.10:25186162:A:T
Gene:: SNORD115-9 (Varview), SNORD115-10 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,500B_downstream_variant,intron_variant,downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000015.10:g.25186163A>T, NC_000015.9:g.25431310A>T, NG_002690.1:g.405254A>T

Select item 14846433175.

rs1484643317 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 15:25187931 (GRCh38)
15:25433078 (GRCh37)
Canonical SPDI:: NC_000015.10:25187930:G:C,NC_000015.10:25187930:G:T
Gene:: SNORD115-10 (Varview), SNORD115-11 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,500B_downstream_variant,intron_variant,downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000066/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
T=0.000223/1 (Estonian)
HGVS:: NC_000015.10:g.25187931G>C, NC_000015.10:g.25187931G>T, NC_000015.9:g.25433078G>C, NC_000015.9:g.25433078G>T, NG_002690.1:g.407022G>C, NG_002690.1:g.407022G>T

Select item 14845727846.

rs1484572784 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:25186593 (GRCh38)
15:25431740 (GRCh37)
Canonical SPDI:: NC_000015.10:25186592:G:C
Gene:: SNORD115-10 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25186593G>C, NC_000015.9:g.25431740G>C, NG_002690.1:g.405684G>C

Select item 14837850277.

rs1483785027 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25187294 (GRCh38)
15:25432441 (GRCh37)
Canonical SPDI:: NC_000015.10:25187293:C:T
Gene:: SNORD115-10 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000015.10:g.25187294C>T, NC_000015.9:g.25432441C>T, NG_002690.1:g.406385C>T

Select item 14816340818.

rs1481634081 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25186321 (GRCh38)
15:25431468 (GRCh37)
Canonical SPDI:: NC_000015.10:25186320:A:G
Gene:: SNORD115-10 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25186321A>G, NC_000015.9:g.25431468A>G, NG_002690.1:g.405412A>G

Select item 14815020569.

rs1481502056 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:25185609 (GRCh38)
15:25430756 (GRCh37)
Canonical SPDI:: NC_000015.10:25185608:G:A
Gene:: SNORD115-9 (Varview), SNORD115-10 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.25185609G>A, NC_000015.9:g.25430756G>A, NG_002690.1:g.404700G>A

Select item 148022492510.

rs1480224925 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25186892 (GRCh38)
15:25432039 (GRCh37)
Canonical SPDI:: NC_000015.10:25186891:C:T
Gene:: SNORD115-10 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.25186892C>T, NC_000015.9:g.25432039C>T, NG_002690.1:g.405983C>T

Select item 147986925311.

rs1479869253 [Homo sapiens]

Variant type:: INS
Alleles:: ->C [Show Flanks]
Chromosome:: 15:25185906 (GRCh38)
15:25431054 (GRCh37)
Canonical SPDI:: NC_000015.10:25185906::C
Gene:: SNORD115-9 (Varview), SNORD115-10 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000064/9 (GnomAD)
HGVS:: NC_000015.10:g.25185906_25185907insC, NC_000015.9:g.25431053_25431054insC, NG_002690.1:g.404997_404998insC

Select item 147905191012.

rs1479051910 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:25187382 (GRCh38)
15:25432529 (GRCh37)
Canonical SPDI:: NC_000015.10:25187381:T:C
Gene:: SNORD115-10 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
HGVS:: NC_000015.10:g.25187382T>C, NC_000015.9:g.25432529T>C, NG_002690.1:g.406473T>C, NR_146177.1:n.12041T>C

Select item 147774279013.

rs1477742790 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25187831 (GRCh38)
15:25432978 (GRCh37)
Canonical SPDI:: NC_000015.10:25187830:C:T
Gene:: SNORD115-10 (Varview), SNORD115-11 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000015.10:g.25187831C>T, NC_000015.9:g.25432978C>T, NG_002690.1:g.406922C>T

Select item 147765006614.

rs1477650066 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:25187171 (GRCh38)
15:25432318 (GRCh37)
Canonical SPDI:: NC_000015.10:25187170:G:C
Gene:: SNORD115-10 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000026/7 (TOPMED)
HGVS:: NC_000015.10:g.25187171G>C, NC_000015.9:g.25432318G>C, NG_002690.1:g.406262G>C

Select item 147692927915.

rs1476929279 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25187662 (GRCh38)
15:25432809 (GRCh37)
Canonical SPDI:: NC_000015.10:25187661:C:T
Gene:: SNORD115-10 (Varview), SNORD115-11 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000015.10:g.25187662C>T, NC_000015.9:g.25432809C>T, NG_002690.1:g.406753C>T

Select item 147447803016.

rs1474478030 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:25187246 (GRCh38)
15:25432393 (GRCh37)
Canonical SPDI:: NC_000015.10:25187245:G:A
Gene:: SNORD115-10 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000015.10:g.25187246G>A, NC_000015.9:g.25432393G>A, NG_002690.1:g.406337G>A

Select item 147412477017.

rs1474124770 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:25185729 (GRCh38)
15:25430876 (GRCh37)
Canonical SPDI:: NC_000015.10:25185728:T:C
Gene:: SNORD115-9 (Varview), SNORD115-10 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000015.10:g.25185729T>C, NC_000015.9:g.25430876T>C, NG_002690.1:g.404820T>C

Select item 147402659518.

rs1474026595 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:25185615 (GRCh38)
15:25430762 (GRCh37)
Canonical SPDI:: NC_000015.10:25185614:G:A
Gene:: SNORD115-9 (Varview), SNORD115-10 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000015.10:g.25185615G>A, NC_000015.9:g.25430762G>A, NG_002690.1:g.404706G>A

Select item 147330878819.

rs1473308788 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 15:25188001 (GRCh38)
15:25433148 (GRCh37)
Canonical SPDI:: NC_000015.10:25188000:C:A,NC_000015.10:25188000:C:T
Gene:: SNORD115-10 (Varview), SNORD115-11 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.25188001C>A, NC_000015.10:g.25188001C>T, NC_000015.9:g.25433148C>A, NC_000015.9:g.25433148C>T, NG_002690.1:g.407092C>A, NG_002690.1:g.407092C>T

Select item 147286350120.

rs1472863501 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 15:25187781 (GRCh38)
15:25432928 (GRCh37)
Canonical SPDI:: NC_000015.10:25187780:G:T
Gene:: SNORD115-10 (Varview), SNORD115-11 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.25187781G>T, NC_000015.9:g.25432928G>T, NG_002690.1:g.406872G>T