SNP Links for Gene (Select 100033451) - SNP

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Links from Gene

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Select item 14892660901.

rs1489266090 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:25194340 (GRCh38)
15:25439487 (GRCh37)
Canonical SPDI:: NC_000015.10:25194339:G:A
Gene:: SNORD115-14 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000015.10:g.25194340G>A, NC_000015.9:g.25439487G>A, NG_002690.1:g.413431G>A

Select item 14866800672.

rs1486680067 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 15:25193144 (GRCh38)
15:25438291 (GRCh37)
Canonical SPDI:: NC_000015.10:25193143:G:A,NC_000015.10:25193143:G:T
Gene:: SNORD115-13 (Varview), SNORD115-14 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0./0 (KOREAN)
A=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.25193144G>A, NC_000015.10:g.25193144G>T, NC_000015.9:g.25438291G>A, NC_000015.9:g.25438291G>T, NG_002690.1:g.412235G>A, NG_002690.1:g.412235G>T, NR_146177.1:n.12527G>A, NR_146177.1:n.12527G>T

Select item 14859289273.

rs1485928927 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 15:25195058 (GRCh38)
15:25440205 (GRCh37)
Canonical SPDI:: NC_000015.10:25195057:C:A
Gene:: SNORD115-14 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000162/3 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
A=0.000446/2 (Estonian)
HGVS:: NC_000015.10:g.25195058C>A, NC_000015.9:g.25440205C>A, NG_002690.1:g.414149C>A

Select item 14856677444.

rs1485667744 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 15:25194060 (GRCh38)
15:25439207 (GRCh37)
Canonical SPDI:: NC_000015.10:25194059:G:A,NC_000015.10:25194059:G:T
Gene:: SNORD115-14 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.25194060G>A, NC_000015.10:g.25194060G>T, NC_000015.9:g.25439207G>A, NC_000015.9:g.25439207G>T, NG_002690.1:g.413151G>A, NG_002690.1:g.413151G>T

Select item 14856161235.

rs1485616123 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 15:25194732 (GRCh38)
15:25439879 (GRCh37)
Canonical SPDI:: NC_000015.10:25194731:GGG:GG
Gene:: SNORD115-14 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GG=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.25194734del, NC_000015.9:g.25439881del, NG_002690.1:g.413825del

Select item 14852771566.

rs1485277156 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 15:25193550 (GRCh38)
15:25438697 (GRCh37)
Canonical SPDI:: NC_000015.10:25193549:G:A,NC_000015.10:25193549:G:C
Gene:: SNORD115-13 (Varview), SNORD115-14 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,500B_downstream_variant,intron_variant,downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
A=0./0 (GnomAD)
HGVS:: NC_000015.10:g.25193550G>A, NC_000015.10:g.25193550G>C, NC_000015.9:g.25438697G>A, NC_000015.9:g.25438697G>C, NG_002690.1:g.412641G>A, NG_002690.1:g.412641G>C

Select item 14842289307.

rs1484228930 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25193020 (GRCh38)
15:25438167 (GRCh37)
Canonical SPDI:: NC_000015.10:25193019:C:T
Gene:: SNORD115-13 (Varview), SNORD115-14 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25193020C>T, NC_000015.9:g.25438167C>T, NG_002690.1:g.412111C>T

Select item 14836400898.

rs1483640089 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25195154 (GRCh38)
15:25440301 (GRCh37)
Canonical SPDI:: NC_000015.10:25195153:C:T
Gene:: SNORD115-14 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000021/3 (GnomAD)
T=0.000156/1 (1000Genomes)
HGVS:: NC_000015.10:g.25195154C>T, NC_000015.9:g.25440301C>T, NG_002690.1:g.414245C>T

Select item 14827280859.

rs1482728085 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 15:25193208 (GRCh38)
15:25438355 (GRCh37)
Canonical SPDI:: NC_000015.10:25193207:C:G
Gene:: SNORD115-13 (Varview), SNORD115-14 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.25193208C>G, NC_000015.9:g.25438355C>G, NG_002690.1:g.412299C>G, NR_146177.1:n.12591C>G

Select item 148170075010.

rs1481700750 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25193394 (GRCh38)
15:25438541 (GRCh37)
Canonical SPDI:: NC_000015.10:25193393:C:T
Gene:: SNORD115-13 (Varview), SNORD115-14 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000015.10:g.25193394C>T, NC_000015.9:g.25438541C>T, NG_002690.1:g.412485C>T, NR_146177.1:n.12777C>T, NR_003305.1:n.74C>T

Select item 148048830311.

rs1480488303 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 15:25195044 (GRCh38)
15:25440191 (GRCh37)
Canonical SPDI:: NC_000015.10:25195043:G:C,NC_000015.10:25195043:G:T
Gene:: SNORD115-14 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000015.10:g.25195044G>C, NC_000015.10:g.25195044G>T, NC_000015.9:g.25440191G>C, NC_000015.9:g.25440191G>T, NG_002690.1:g.414135G>C, NG_002690.1:g.414135G>T

Select item 148035125712.

rs1480351257 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:25194461 (GRCh38)
15:25439608 (GRCh37)
Canonical SPDI:: NC_000015.10:25194460:G:A
Gene:: SNORD115-14 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000015.10:g.25194461G>A, NC_000015.9:g.25439608G>A, NG_002690.1:g.413552G>A

Select item 147879565513.

rs1478795655 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25195146 (GRCh38)
15:25440293 (GRCh37)
Canonical SPDI:: NC_000015.10:25195145:C:T
Gene:: SNORD115-14 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000026/7 (TOPMED)
T=0.000029/4 (GnomAD)
T=0.000342/1 (KOREAN)
T=0.000546/1 (Korea1K)
T=0.001168/20 (TOMMO)
HGVS:: NC_000015.10:g.25195146C>T, NC_000015.9:g.25440293C>T, NG_002690.1:g.414237C>T

Select item 147868521014.

rs1478685210 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25194401 (GRCh38)
15:25439548 (GRCh37)
Canonical SPDI:: NC_000015.10:25194400:C:T
Gene:: SNORD115-14 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.25194401C>T, NC_000015.9:g.25439548C>T, NG_002690.1:g.413492C>T

Select item 147835492115.

rs1478354921 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25194723 (GRCh38)
15:25439870 (GRCh37)
Canonical SPDI:: NC_000015.10:25194722:C:T
Gene:: SNORD115-14 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25194723C>T, NC_000015.9:g.25439870C>T, NG_002690.1:g.413814C>T

Select item 147732805416.

rs1477328054 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:25195105 (GRCh38)
15:25440252 (GRCh37)
Canonical SPDI:: NC_000015.10:25195104:G:C
Gene:: SNORD115-14 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000021/3 (GnomAD)
C=0.000023/6 (TOPMED)
HGVS:: NC_000015.10:g.25195105G>C, NC_000015.9:g.25440252G>C, NG_002690.1:g.414196G>C

Select item 147671971017.

rs1476719710 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 15:25195093 (GRCh38)
15:25440240 (GRCh37)
Canonical SPDI:: NC_000015.10:25195092:A:
Gene:: SNORD115-14 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000011/3 (TOPMED)
-=0.000043/6 (GnomAD)
HGVS:: NC_000015.10:g.25195093del, NC_000015.9:g.25440240del, NG_002690.1:g.414184del

Select item 147577117018.

rs1475771170 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:25193444 (GRCh38)
15:25438591 (GRCh37)
Canonical SPDI:: NC_000015.10:25193443:G:A
Gene:: SNORD115-13 (Varview), SNORD115-14 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.25193444G>A, NC_000015.9:g.25438591G>A, NG_002690.1:g.412535G>A

Select item 147542020519.

rs1475420205 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 15:25193812 (GRCh38)
15:25438959 (GRCh37)
Canonical SPDI:: NC_000015.10:25193811:A:T
Gene:: SNORD115-13 (Varview), SNORD115-14 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.25193812A>T, NC_000015.9:g.25438959A>T, NG_002690.1:g.412903A>T

Select item 147541111020.

rs1475411110 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 15:25193292 (GRCh38)
15:25438439 (GRCh37)
Canonical SPDI:: NC_000015.10:25193291:C:G
Gene:: SNORD115-13 (Varview), SNORD115-14 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: G=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000015.10:g.25193292C>G, NC_000015.9:g.25438439C>G, NG_002690.1:g.412383C>G, NR_146177.1:n.12675C>G