SNP Links for Gene (Select 104355137) - SNP

Links from Gene

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Select item 14903939891.

rs1490393989 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 13:20100833 (GRCh38)
13:20674972 (GRCh37)
Canonical SPDI:: NC_000013.11:20100832:C:G
Gene:: LINC01072 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000013.11:g.20100833C>G, NC_000013.10:g.20674972C>G

Select item 14890674502.

rs1489067450 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:20102997 (GRCh38)
13:20677136 (GRCh37)
Canonical SPDI:: NC_000013.11:20102996:G:A
Gene:: LINC01072 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000013.11:g.20102997G>A, NC_000013.10:g.20677136G>A, NR_126380.1:n.198G>A

Select item 14873979253.

rs1487397925 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:20101204 (GRCh38)
13:20675343 (GRCh37)
Canonical SPDI:: NC_000013.11:20101203:T:C
Gene:: LINC01072 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.20101204T>C, NC_000013.10:g.20675343T>C

Select item 14873704034.

rs1487370403 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 13:20101506 (GRCh38)
13:20675645 (GRCh37)
Canonical SPDI:: NC_000013.11:20101505:A:T
Gene:: LINC01072 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
HGVS:: NC_000013.11:g.20101506A>T, NC_000013.10:g.20675645A>T

Select item 14873477485.

rs1487347748 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:20102540 (GRCh38)
13:20676679 (GRCh37)
Canonical SPDI:: NC_000013.11:20102539:T:C
Gene:: LINC01072 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.20102540T>C, NC_000013.10:g.20676679T>C

Select item 14870777606.

rs1487077760 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 13:20102726 (GRCh38)
13:20676865 (GRCh37)
Canonical SPDI:: NC_000013.11:20102725:C:A,NC_000013.11:20102725:C:T
Gene:: LINC01072 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000071/1 (TOMMO)
HGVS:: NC_000013.11:g.20102726C>A, NC_000013.11:g.20102726C>T, NC_000013.10:g.20676865C>A, NC_000013.10:g.20676865C>T, NR_126380.1:n.26C>A, NR_126380.1:n.26C>T

Select item 14861267017.

rs1486126701 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 13:20103647 (GRCh38)
13:20677786 (GRCh37)
Canonical SPDI:: NC_000013.11:20103646:C:G
Gene:: LINC01072 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000021/3 (GnomAD)
HGVS:: NC_000013.11:g.20103647C>G, NC_000013.10:g.20677786C>G

Select item 14860251428.

rs1486025142 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 13:20101203 (GRCh38)
13:20675342 (GRCh37)
Canonical SPDI:: NC_000013.11:20101202:A:G
Gene:: LINC01072 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
G=0.000071/1 (TOMMO)
HGVS:: NC_000013.11:g.20101203A>G, NC_000013.10:g.20675342A>G

Select item 14853748119.

rs1485374811 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TTT [Show Flanks]
Chromosome:: 13:20103593 (GRCh38)
13:20677733 (GRCh37)
Canonical SPDI:: NC_000013.11:20103593:TTTT:TTTTTTT
Gene:: LINC01072 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTT=0.000066/1 (ALFA)
TTT=0.000014/2 (GnomAD)
TTT=0.000223/1 (Estonian)
HGVS:: NC_000013.11:g.20103595_20103597dup, NC_000013.10:g.20677734_20677736dup

Select item 148324816510.

rs1483248165 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 13:20101039 (GRCh38)
13:20675178 (GRCh37)
Canonical SPDI:: NC_000013.11:20101038:A:T
Gene:: LINC01072 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: T=0.000014/2 (GnomAD)
HGVS:: NC_000013.11:g.20101039A>T, NC_000013.10:g.20675178A>T

Select item 148250713811.

rs1482507138 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:20101704 (GRCh38)
13:20675843 (GRCh37)
Canonical SPDI:: NC_000013.11:20101703:G:A
Gene:: LINC01072 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000013.11:g.20101704G>A, NC_000013.10:g.20675843G>A

Select item 148053879012.

rs1480538790 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:20102778 (GRCh38)
13:20676917 (GRCh37)
Canonical SPDI:: NC_000013.11:20102777:C:T
Gene:: LINC01072 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.20102778C>T, NC_000013.10:g.20676917C>T, NR_126380.1:n.78C>T

Select item 147994710913.

rs1479947109 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->ATTCTTGTG [Show Flanks]
Chromosome:: 13:20103331 (GRCh38)
13:20677471 (GRCh37)
Canonical SPDI:: NC_000013.11:20103331:GTGATTCTTGTG:GTGATTCTTGTGATTCTTGTG
Gene:: LINC01072 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: GTGATTCTTGTGATTCTTGTG=0./0 (ALFA)
GTGATTCTT=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.20103335_20103343dup, NC_000013.10:g.20677474_20677482dup

Select item 147811782114.

rs1478117821 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:20102048 (GRCh38)
13:20676187 (GRCh37)
Canonical SPDI:: NC_000013.11:20102047:G:A
Gene:: LINC01072 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000013.11:g.20102048G>A, NC_000013.10:g.20676187G>A

Select item 147806708415.

rs1478067084 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:20103207 (GRCh38)
13:20677346 (GRCh37)
Canonical SPDI:: NC_000013.11:20103206:G:A
Gene:: LINC01072 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000013.11:g.20103207G>A, NC_000013.10:g.20677346G>A, NR_126380.1:n.408G>A

Select item 147740298716.

rs1477402987 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 13:20102203 (GRCh38)
13:20676342 (GRCh37)
Canonical SPDI:: NC_000013.11:20102202:G:C
Gene:: LINC01072 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.20102203G>C, NC_000013.10:g.20676342G>C

Select item 147596271817.

rs1475962718 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTGG>- [Show Flanks]
Chromosome:: 13:20102206 (GRCh38)
13:20676345 (GRCh37)
Canonical SPDI:: NC_000013.11:20102203:GGTTGG:GG
Gene:: LINC01072 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GG=0./0 (ALFA)
-=0.000014/2 (GnomAD)
-=0.000026/7 (TOPMED)
HGVS:: NC_000013.11:g.20102206_20102209del, NC_000013.10:g.20676345_20676348del

Select item 147563511018.

rs1475635110 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 13:20101056 (GRCh38)
13:20675195 (GRCh37)
Canonical SPDI:: NC_000013.11:20101055:T:G
Gene:: LINC01072 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.05099/149 (KOREAN)
HGVS:: NC_000013.11:g.20101056T>G, NC_000013.10:g.20675195T>G

Select item 147498187419.

rs1474981874 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 13:20103390 (GRCh38)
13:20677529 (GRCh37)
Canonical SPDI:: NC_000013.11:20103389:C:G
Gene:: LINC01072 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000447/2 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000446/2 (Estonian)
HGVS:: NC_000013.11:g.20103390C>G, NC_000013.10:g.20677529C>G

Select item 147365135520.

rs1473651355 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 13:20102359 (GRCh38)
13:20676498 (GRCh37)
Canonical SPDI:: NC_000013.11:20102358:G:C
Gene:: LINC01072 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.20102359G>C, NC_000013.10:g.20676498G>C

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