SNP Links for Gene (Select 105376365) - SNP

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Select item 14899932791.

rs1489993279 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:3834650 (GRCh38)
10:3876842 (GRCh37)
Canonical SPDI:: NC_000010.11:3834649:A:G
Gene:: LINC02639 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0./0 (GnomAD)
G=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.3834650A>G, NC_000010.10:g.3876842A>G, NR_134490.1:n.458A>G

Select item 14898671022.

rs1489867102 [Homo sapiens]

Variant type:: INS
Alleles:: ->G [Show Flanks]
Chromosome:: 10:3833722 (GRCh38)
10:3875915 (GRCh37)
Canonical SPDI:: NC_000010.11:3833722::G
Gene:: LINC02639 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.3833722_3833723insG, NC_000010.10:g.3875914_3875915insG

Select item 14897423803.

rs1489742380 has merged into rs1444267874 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>-,TT [Show Flanks]
Chromosome:: 10:3833770 (GRCh38)
10:3875962 (GRCh37)
Canonical SPDI:: NC_000010.11:3833769:TTTT:TTT,NC_000010.11:3833769:TTTT:TTTTT
Gene:: LINC02639 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTT=0./0 (ALFA)
HGVS:: NC_000010.11:g.3833773del, NC_000010.11:g.3833773dup, NC_000010.10:g.3875965del, NC_000010.10:g.3875965dup

Select item 14883240714.

rs1488324071 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 10:3833337 (GRCh38)
10:3875529 (GRCh37)
Canonical SPDI:: NC_000010.11:3833336:G:A,NC_000010.11:3833336:G:C
Gene:: LINC02639 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000010.11:g.3833337G>A, NC_000010.11:g.3833337G>C, NC_000010.10:g.3875529G>A, NC_000010.10:g.3875529G>C

Select item 14878772255.

rs1487877225 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:3832040 (GRCh38)
10:3874232 (GRCh37)
Canonical SPDI:: NC_000010.11:3832039:C:T
Gene:: LINC02639 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000010.11:g.3832040C>T, NC_000010.10:g.3874232C>T

Select item 14874383316.

rs1487438331 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:3835182 (GRCh38)
10:3877374 (GRCh37)
Canonical SPDI:: NC_000010.11:3835181:A:G
Gene:: LINC02639 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.00005/7 (GnomAD)
G=0.000156/1 (1000Genomes)
HGVS:: NC_000010.11:g.3835182A>G, NC_000010.10:g.3877374A>G

Select item 14820223417.

rs1482022341 [Homo sapiens]

Variant type:: DELINS
Alleles:: GTAA>- [Show Flanks]
Chromosome:: 10:3835040 (GRCh38)
10:3877232 (GRCh37)
Canonical SPDI:: NC_000010.11:3835036:TAAGTAA:TAA
Gene:: LINC02639 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TAA=0./0 (ALFA)
-=0.000014/2 (GnomAD)
-=0.000019/5 (TOPMED)
HGVS:: NC_000010.11:g.3835040_3835043del, NC_000010.10:g.3877232_3877235del

Select item 14804475538.

rs1480447553 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 10:3832380 (GRCh38)
10:3874572 (GRCh37)
Canonical SPDI:: NC_000010.11:3832379:A:G,NC_000010.11:3832379:A:T
Gene:: LINC02639 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000023/6 (TOPMED)
HGVS:: NC_000010.11:g.3832380A>G, NC_000010.11:g.3832380A>T, NC_000010.10:g.3874572A>G, NC_000010.10:g.3874572A>T

Select item 14801661619.

rs1480166161 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 10:3832555 (GRCh38)
10:3874747 (GRCh37)
Canonical SPDI:: NC_000010.11:3832554:C:A
Gene:: LINC02639 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.3832555C>A, NC_000010.10:g.3874747C>A

Select item 148006430710.

rs1480064307 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 10:3833546 (GRCh38)
10:3875738 (GRCh37)
Canonical SPDI:: NC_000010.11:3833545:A:C
Gene:: LINC02639 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
HGVS:: NC_000010.11:g.3833546A>C, NC_000010.10:g.3875738A>C

Select item 147982514511.

rs1479825145 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 10:3833374 (GRCh38)
10:3875566 (GRCh37)
Canonical SPDI:: NC_000010.11:3833373:G:T
Gene:: LINC02639 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0.000084/1 (ALFA)
T=0.000015/4 (TOPMED)
HGVS:: NC_000010.11:g.3833374G>T, NC_000010.10:g.3875566G>T

Select item 147950282912.

rs1479502829 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GAT [Show Flanks]
Chromosome:: 10:3833756 (GRCh38)
10:3875949 (GRCh37)
Canonical SPDI:: NC_000010.11:3833756:TGAT:TGATGAT
Gene:: LINC02639 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGATGAT=0.000071/1 (ALFA)
TGA=0.000014/2 (GnomAD)
TGA=0.000015/4 (TOPMED)
HGVS:: NC_000010.11:g.3833758_3833760dup, NC_000010.10:g.3875950_3875952dup

Select item 147893420113.

rs1478934201 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 10:3834083 (GRCh38)
10:3876275 (GRCh37)
Canonical SPDI:: NC_000010.11:3834082:G:T
Gene:: LINC02639 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000026/7 (TOPMED)
HGVS:: NC_000010.11:g.3834083G>T, NC_000010.10:g.3876275G>T, NR_134490.1:n.134G>T

Select item 147839430714.

rs1478394307 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 10:3833898 (GRCh38)
10:3876090 (GRCh37)
Canonical SPDI:: NC_000010.11:3833897:C:G
Gene:: LINC02639 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000043/6 (GnomAD)
HGVS:: NC_000010.11:g.3833898C>G, NC_000010.10:g.3876090C>G

Select item 147738001015.

rs1477380010 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:3834275 (GRCh38)
10:3876467 (GRCh37)
Canonical SPDI:: NC_000010.11:3834274:G:A
Gene:: LINC02639 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.3834275G>A, NC_000010.10:g.3876467G>A

Select item 147730111616.

rs1477301116 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:3835208 (GRCh38)
10:3877400 (GRCh37)
Canonical SPDI:: NC_000010.11:3835207:T:C
Gene:: LINC02639 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency
MAF:: C=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.3835208T>C, NC_000010.10:g.3877400T>C

Select item 147700534317.

rs1477005343 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:3832727 (GRCh38)
10:3874919 (GRCh37)
Canonical SPDI:: NC_000010.11:3832726:A:G
Gene:: LINC02639 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000010.11:g.3832727A>G, NC_000010.10:g.3874919A>G

Select item 147637381318.

rs1476373813 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:3832372 (GRCh38)
10:3874564 (GRCh37)
Canonical SPDI:: NC_000010.11:3832371:G:A
Gene:: LINC02639 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.3832372G>A, NC_000010.10:g.3874564G>A

Select item 147322973419.

rs1473229734 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 10:3834464 (GRCh38)
10:3876656 (GRCh37)
Canonical SPDI:: NC_000010.11:3834463:G:T
Gene:: LINC02639 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.3834464G>T, NC_000010.10:g.3876656G>T

Select item 147263623020.

rs1472636230 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 10:3834100 (GRCh38)
10:3876292 (GRCh37)
Canonical SPDI:: NC_000010.11:3834099:C:A
Gene:: LINC02639 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000010.11:g.3834100C>A, NC_000010.10:g.3876292C>A, NR_134490.1:n.151C>A

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