SNP Links for Gene (Select 107984208) - SNP

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Select item 14911602771.

rs1491160277 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TC [Show Flanks]
Chromosome:: 10:11610634 (GRCh38)
10:11652634 (GRCh37)
Canonical SPDI:: NC_000010.11:11610634:TC:TCTC
Gene:: USP6NL (Varview), USP6NL-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: TCTC=0.00008/1 (ALFA)
HGVS:: NC_000010.11:g.11610635_11610636dup, NC_000010.10:g.11652634_11652635dup

Select item 14905751802.

rs1490575180 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:11611408 (GRCh38)
10:11653407 (GRCh37)
Canonical SPDI:: NC_000010.11:11611407:G:A
Gene:: USP6NL (Varview), USP6NL-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.11611408G>A, NC_000010.10:g.11653407G>A, NR_160647.1:n.108G>A

Select item 14901394903.

rs1490139490 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:11612213 (GRCh38)
10:11654212 (GRCh37)
Canonical SPDI:: NC_000010.11:11612212:T:C
Gene:: USP6NL (Varview), USP6NL-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.11612213T>C, NC_000010.10:g.11654212T>C, NR_160647.1:n.913T>C

Select item 14891185194.

rs1489118519 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 10:11612315 (GRCh38)
10:11654314 (GRCh37)
Canonical SPDI:: NC_000010.11:11612314:T:G
Gene:: USP6NL (Varview), USP6NL-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,500B_downstream_variant,downstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.0016/7 (ALFA)
HGVS:: NC_000010.11:g.11612315T>G, NC_000010.10:g.11654314T>G

Select item 14890840715.

rs1489084071 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 10:11612877 (GRCh38)
10:11654876 (GRCh37)
Canonical SPDI:: NC_000010.11:11612876:A:C
Gene:: USP6NL (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.11612877A>C, NC_000010.10:g.11654876A>C

Select item 14880909656.

rs1488090965 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:11610786 (GRCh38)
10:11652785 (GRCh37)
Canonical SPDI:: NC_000010.11:11610785:G:A
Gene:: USP6NL (Varview), USP6NL-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.11610786G>A, NC_000010.10:g.11652785G>A

Select item 14871072317.

rs1487107231 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 10:11611143 (GRCh38)
10:11653142 (GRCh37)
Canonical SPDI:: NC_000010.11:11611142:G:A,NC_000010.11:11611142:G:C
Gene:: USP6NL (Varview), USP6NL-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.11611143G>A, NC_000010.11:g.11611143G>C, NC_000010.10:g.11653142G>A, NC_000010.10:g.11653142G>C

Select item 14869159498.

rs1486915949 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 10:11609009 (GRCh38)
10:11651008 (GRCh37)
Canonical SPDI:: NC_000010.11:11609008:A:C
Gene:: USP6NL (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000066/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000223/1 (Estonian)
HGVS:: NC_000010.11:g.11609009A>C, NC_000010.10:g.11651008A>C

Select item 14868120829.

rs1486812082 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 10:11611052 (GRCh38)
10:11653051 (GRCh37)
Canonical SPDI:: NC_000010.11:11611051:G:A,NC_000010.11:11611051:G:C
Gene:: USP6NL (Varview), USP6NL-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000285/4 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000015/4 (TOPMED)
A=0.000035/1 (TOMMO)
HGVS:: NC_000010.11:g.11611052G>A, NC_000010.11:g.11611052G>C, NC_000010.10:g.11653051G>A, NC_000010.10:g.11653051G>C

Select item 148580520110.

rs1485805201 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 10:11609459 (GRCh38)
10:11651459 (GRCh37)
Canonical SPDI:: NC_000010.11:11609459:TT:TTT
Gene:: USP6NL (Varview), USP6NL-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTT=0./0 (ALFA)
T=0.000009/1 (GnomAD)
T=0.000019/5 (TOPMED)
HGVS:: NC_000010.11:g.11609461dup, NC_000010.10:g.11651460dup

Select item 148578253811.

rs1485782538 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:11611420 (GRCh38)
10:11653419 (GRCh37)
Canonical SPDI:: NC_000010.11:11611419:G:A
Gene:: USP6NL (Varview), USP6NL-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000015/4 (TOPMED)
A=0.000021/3 (GnomAD)
A=0.000106/2 (TOMMO)
HGVS:: NC_000010.11:g.11611420G>A, NC_000010.10:g.11653419G>A, NR_160647.1:n.120G>A

Select item 148557005112.

rs1485570051 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 10:11608824 (GRCh38)
10:11650823 (GRCh37)
Canonical SPDI:: NC_000010.11:11608823:A:T
Gene:: USP6NL (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.11608824A>T, NC_000010.10:g.11650823A>T

Select item 148482564213.

rs1484825642 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:11609911 (GRCh38)
10:11651910 (GRCh37)
Canonical SPDI:: NC_000010.11:11609910:A:G
Gene:: USP6NL (Varview), USP6NL-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.11609911A>G, NC_000010.10:g.11651910A>G

Select item 148477460614.

rs1484774606 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTATTATTCTTACA>- [Show Flanks]
Chromosome:: 10:11608948 (GRCh38)
10:11650947 (GRCh37)
Canonical SPDI:: NC_000010.11:11608946:ATTATTATTCTTACA:A
Gene:: USP6NL (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000034/9 (TOPMED)
HGVS:: NC_000010.11:g.11608948_11608961del, NC_000010.10:g.11650947_11650960del

Select item 148427063015.

rs1484270630 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 10:11612745 (GRCh38)
10:11654744 (GRCh37)
Canonical SPDI:: NC_000010.11:11612744:T:G
Gene:: USP6NL (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000010.11:g.11612745T>G, NC_000010.10:g.11654744T>G

Select item 148240111416.

rs1482401114 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GG [Show Flanks]
Chromosome:: 10:11610609 (GRCh38)
10:11652609 (GRCh37)
Canonical SPDI:: NC_000010.11:11610609:GG:GGGG
Gene:: USP6NL (Varview), USP6NL-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGG=0./0 (ALFA)
GG=0.000004/1 (TOPMED)
GG=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.11610610_11610611dup, NC_000010.10:g.11652609_11652610dup

Select item 148169817217.

rs1481698172 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:11611343 (GRCh38)
10:11653342 (GRCh37)
Canonical SPDI:: NC_000010.11:11611342:C:T
Gene:: USP6NL (Varview), USP6NL-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.11611343C>T, NC_000010.10:g.11653342C>T, NR_160647.1:n.43C>T

Select item 147856339818.

rs1478563398 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:11610543 (GRCh38)
10:11652542 (GRCh37)
Canonical SPDI:: NC_000010.11:11610542:T:C
Gene:: USP6NL (Varview), USP6NL-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000010.11:g.11610543T>C, NC_000010.10:g.11652542T>C

Select item 147851083419.

rs1478510834 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:11609437 (GRCh38)
10:11651436 (GRCh37)
Canonical SPDI:: NC_000010.11:11609436:C:T
Gene:: USP6NL (Varview), USP6NL-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.11609437C>T, NC_000010.10:g.11651436C>T

Select item 147739794820.

rs1477397948 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:11611126 (GRCh38)
10:11653125 (GRCh37)
Canonical SPDI:: NC_000010.11:11611125:G:A
Gene:: USP6NL (Varview), USP6NL-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000026/7 (TOPMED)
HGVS:: NC_000010.11:g.11611126G>A, NC_000010.10:g.11653125G>A

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