SNP Links for Gene (Select 252948) - SNP

Links from Gene

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Select item 14370540101.

rs1437054010 has merged into rs376116829 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>-,AA,AAA [Show Flanks]
Chromosome:: Y:7700083 (GRCh38)
Y:7568124 (GRCh37)
Canonical SPDI:: NC_000024.10:7700082:AAAAAAAAAA:AAAAAAAAA,NC_000024.10:7700082:AAAAAAAAAA:AAAAAAAAAAA,NC_000024.10:7700082:AAAAAAAAAA:AAAAAAAAAAAA
Gene:: TTTY16 (Varview)
Functional Consequence:: intron_variant
Validated:: by cluster
HGVS:: NC_000024.10:g.7700092del, NC_000024.10:g.7700092dup, NC_000024.10:g.7700091_7700092dup, NC_000024.9:g.7568133del, NC_000024.9:g.7568133dup, NC_000024.9:g.7568132_7568133dup

Select item 13705768832.

rs1370576883 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: Y:7701789 (GRCh38)
Y:7569830 (GRCh37)
Canonical SPDI:: NC_000024.10:7701788:G:C
Gene:: TTTY16 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: C=0.00007/2 (GnomAD)
HGVS:: NC_000024.10:g.7701789G>C, NC_000024.9:g.7569830G>C

Select item 13240815493.

rs1324081549 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:7701206 (GRCh38)
Y:7569247 (GRCh37)
Canonical SPDI:: NC_000024.10:7701205:G:A
Gene:: TTTY16 (Varview)
Functional Consequence:: non_coding_transcript_variant
HGVS:: NC_000024.10:g.7701206G>A, NC_000024.9:g.7569247G>A, NR_001552.1:n.42C>T

Select item 12767434474.

rs1276743447 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:7702288 (GRCh38)
Y:7570329 (GRCh37)
Canonical SPDI:: NC_000024.10:7702287:G:A
Gene:: TTTY16 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
HGVS:: NC_000024.10:g.7702288G>A, NC_000024.9:g.7570329G>A

Select item 12660070755.

rs1266007075 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: Y:7699301 (GRCh38)
Y:7567342 (GRCh37)
Canonical SPDI:: NC_000024.10:7699300:C:T
Gene:: TTTY16 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
HGVS:: NC_000024.10:g.7699301C>T, NC_000024.9:g.7567342C>T

Select item 12354077576.

rs1235407757 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: Y:7699080 (GRCh38)
Y:7567121 (GRCh37)
Canonical SPDI:: NC_000024.10:7699079:T:C
Gene:: TTTY16 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
HGVS:: NC_000024.10:g.7699080T>C, NC_000024.9:g.7567121T>C

Select item 10495499817.

rs1049549981 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: Y:7701779 (GRCh38)
Y:7569820 (GRCh37)
Canonical SPDI:: NC_000024.10:7701778:A:T
Gene:: TTTY16 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
HGVS:: NC_000024.10:g.7701779A>T, NC_000024.9:g.7569820A>T

Select item 10477567278.

rs1047756727 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: Y:7698895 (GRCh38)
Y:7566936 (GRCh37)
Canonical SPDI:: NC_000024.10:7698894:G:C
Gene:: TTTY16 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
HGVS:: NC_000024.10:g.7698895G>C, NC_000024.9:g.7566936G>C

Select item 10386148599.

rs1038614859 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: Y:7698945 (GRCh38)
Y:7566986 (GRCh37)
Canonical SPDI:: NC_000024.10:7698944:A:G
Gene:: TTTY16 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: G=0.00003/1 (GnomAD)
HGVS:: NC_000024.10:g.7698945A>G, NC_000024.9:g.7566986A>G

Select item 103582737210.

rs1035827372 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: Y:7702255 (GRCh38)
Y:7570296 (GRCh37)
Canonical SPDI:: NC_000024.10:7702254:C:T
Gene:: TTTY16 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
HGVS:: NC_000024.10:g.7702255C>T, NC_000024.9:g.7570296C>T

Select item 103131525611.

rs1031315256 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:7701874 (GRCh38)
Y:7569915 (GRCh37)
Canonical SPDI:: NC_000024.10:7701873:G:A
Gene:: TTTY16 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
HGVS:: NC_000024.10:g.7701874G>A, NC_000024.9:g.7569915G>A

Select item 102190117212.

rs1021901172 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: Y:7702076 (GRCh38)
Y:7570117 (GRCh37)
Canonical SPDI:: NC_000024.10:7702075:T:C
Gene:: TTTY16 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: C=0./0 (PRJEB36033)
C=0.00129/38 (GnomAD)
HGVS:: NC_000024.10:g.7702076T>C, NC_000024.9:g.7570117T>C

Select item 101164326313.

rs1011643263 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: Y:7702064 (GRCh38)
Y:7570105 (GRCh37)
Canonical SPDI:: NC_000024.10:7702063:C:T
Gene:: TTTY16 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
HGVS:: NC_000024.10:g.7702064C>T, NC_000024.9:g.7570105C>T

Select item 100789073014.

rs1007890730 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:7701861 (GRCh38)
Y:7569902 (GRCh37)
Canonical SPDI:: NC_000024.10:7701860:G:A
Gene:: TTTY16 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: A=0.00003/1 (GnomAD)
A=0.00063/1 (1000Genomes)
HGVS:: NC_000024.10:g.7701861G>A, NC_000024.9:g.7569902G>A

Select item 100788904715.

rs1007889047 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: Y:7700364 (GRCh38)
Y:7568405 (GRCh37)
Canonical SPDI:: NC_000024.10:7700363:T:C
Gene:: TTTY16 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.7700364T>C, NC_000024.9:g.7568405T>C

Select item 100410028016.

rs1004100280 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: Y:7698939 (GRCh38)
Y:7566980 (GRCh37)
Canonical SPDI:: NC_000024.10:7698938:A:G
Gene:: TTTY16 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
HGVS:: NC_000024.10:g.7698939A>G, NC_000024.9:g.7566980A>G

Select item 99701568617.

rs997015686 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: Y:7699467 (GRCh38)
Y:7567508 (GRCh37)
Canonical SPDI:: NC_000024.10:7699466:C:T
Gene:: TTTY16 (Varview)
Functional Consequence:: non_coding_transcript_variant
HGVS:: NC_000024.10:g.7699467C>T, NC_000024.9:g.7567508C>T, NR_001552.1:n.82G>A

Select item 99039180218.

rs990391802 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: Y:7700525 (GRCh38)
Y:7568566 (GRCh37)
Canonical SPDI:: NC_000024.10:7700524:A:G
Gene:: TTTY16 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.7700525A>G, NC_000024.9:g.7568566A>G

Select item 98029914319.

rs980299143 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:7702240 (GRCh38)
Y:7570281 (GRCh37)
Canonical SPDI:: NC_000024.10:7702239:G:A
Gene:: TTTY16 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: A=0.00003/1 (GnomAD)
HGVS:: NC_000024.10:g.7702240G>A, NC_000024.9:g.7570281G>A

Select item 97071287820.

rs970712878 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:7702114 (GRCh38)
Y:7570155 (GRCh37)
Canonical SPDI:: NC_000024.10:7702113:G:A
Gene:: TTTY16 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
HGVS:: NC_000024.10:g.7702114G>A, NC_000024.9:g.7570155G>A

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