SNP Links for Gene (Select 3443) - SNP

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Select item 14900713641.

rs1490071364 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 9:21351689 (GRCh38)
9:21351688 (GRCh37)
Canonical SPDI:: NC_000009.12:21351688:A:C
Gene:: IFNA6 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.21351689A>C, NC_000009.11:g.21351688A>C

Select item 14900353902.

rs1490035390 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:21352557 (GRCh38)
9:21352556 (GRCh37)
Canonical SPDI:: NC_000009.12:21352556:T:C
Gene:: IFNA6 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000009.12:g.21352557T>C, NC_000009.11:g.21352556T>C

Select item 14898132673.

rs1489813267 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:21350571 (GRCh38)
9:21350570 (GRCh37)
Canonical SPDI:: NC_000009.12:21350570:T:C
Gene:: IFNA6 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
C=0.000008/2 (GnomAD_exomes)
HGVS:: NC_000009.12:g.21350571T>C, NC_000009.11:g.21350570T>C, NM_021002.2:c.317A>G, NP_066282.1:p.Asp106Gly

Select item 14893922044.

rs1489392204 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:21350917 (GRCh38)
9:21350916 (GRCh37)
Canonical SPDI:: NC_000009.12:21350916:T:C
Gene:: IFNA6 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000009.12:g.21350917T>C, NC_000009.11:g.21350916T>C

Select item 14890960875.

rs1489096087 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 9:21350028 (GRCh38)
9:21350027 (GRCh37)
Canonical SPDI:: NC_000009.12:21350027:T:C,NC_000009.12:21350027:T:G
Gene:: IFNA6 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000009.12:g.21350028T>C, NC_000009.12:g.21350028T>G, NC_000009.11:g.21350027T>C, NC_000009.11:g.21350027T>G

Select item 14877500526.

rs1487750052 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 9:21350627 (GRCh38)
9:21350626 (GRCh37)
Canonical SPDI:: NC_000009.12:21350626:G:A,NC_000009.12:21350626:G:C
Gene:: IFNA6 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000009.12:g.21350627G>A, NC_000009.12:g.21350627G>C, NC_000009.11:g.21350626G>A, NC_000009.11:g.21350626G>C, NM_021002.2:c.261C>T, NM_021002.2:c.261C>G

Select item 14877274287.

rs1487727428 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 9:21350254 (GRCh38)
9:21350253 (GRCh37)
Canonical SPDI:: NC_000009.12:21350253:C:A
Gene:: IFNA6 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.21350254C>A, NC_000009.11:g.21350253C>A

Select item 14870819968.

rs1487081996 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:21350796 (GRCh38)
9:21350795 (GRCh37)
Canonical SPDI:: NC_000009.12:21350795:C:T
Gene:: IFNA6 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.21350796C>T, NC_000009.11:g.21350795C>T, NM_021002.2:c.92G>A, NP_066282.1:p.Ser31Asn

Select item 14866417309.

rs1486641730 [Homo sapiens]

Variant type:: DELINS
Alleles:: TAT>- [Show Flanks]
Chromosome:: 9:21350076 (GRCh38)
9:21350075 (GRCh37)
Canonical SPDI:: NC_000009.12:21350072:TATTAT:TAT
Gene:: IFNA6 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TATTAT=0./0 (ALFA)
-=0.000011/3 (TOPMED)
-=0.000021/3 (GnomAD)
HGVS:: NC_000009.12:g.21350073TAT[1], NC_000009.11:g.21350072TAT[1]

Select item 148622525310.

rs1486225253 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:21351413 (GRCh38)
9:21351412 (GRCh37)
Canonical SPDI:: NC_000009.12:21351412:T:C
Gene:: IFNA6 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.21351413T>C, NC_000009.11:g.21351412T>C

Select item 148337687511.

rs1483376875 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 9:21350698 (GRCh38)
9:21350697 (GRCh37)
Canonical SPDI:: NC_000009.12:21350697:C:A
Gene:: IFNA6 (Varview)
Functional Consequence:: coding_sequence_variant,stop_gained
Validated:: by frequency
MAF:: A=0.000008/2 (GnomAD_exomes)
HGVS:: NC_000009.12:g.21350698C>A, NC_000009.11:g.21350697C>A, NM_021002.2:c.190G>T, NP_066282.1:p.Glu64Ter

Select item 148072445612.

rs1480724456 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:21352427 (GRCh38)
9:21352426 (GRCh37)
Canonical SPDI:: NC_000009.12:21352426:T:C
Gene:: IFNA6 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000009.12:g.21352427T>C, NC_000009.11:g.21352426T>C

Select item 148059356213.

rs1480593562 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 9:21350762 (GRCh38)
9:21350761 (GRCh37)
Canonical SPDI:: NC_000009.12:21350761:T:A
Gene:: IFNA6 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency
MAF:: A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000009.12:g.21350762T>A, NC_000009.11:g.21350761T>A, NM_021002.2:c.126A>T

Select item 148050057714.

rs1480500577 has merged into rs1387627468 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>-,TT [Show Flanks]
Chromosome:: 9:21352093 (GRCh38)
9:21352092 (GRCh37)
Canonical SPDI:: NC_000009.12:21352092:TTTTTTTT:TTTTTTT,NC_000009.12:21352092:TTTTTTTT:TTTTTTTTT
Gene:: IFNA6 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTT=0./0 (ALFA)
HGVS:: NC_000009.12:g.21352100del, NC_000009.12:g.21352100dup, NC_000009.11:g.21352099del, NC_000009.11:g.21352099dup

Select item 147987900515.

rs1479879005 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:21352622 (GRCh38)
9:21352621 (GRCh37)
Canonical SPDI:: NC_000009.12:21352621:C:T
Gene:: IFNA6 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.21352622C>T, NC_000009.11:g.21352621C>T

Select item 147867967116.

rs1478679671 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 9:21350139 (GRCh38)
9:21350138 (GRCh37)
Canonical SPDI:: NC_000009.12:21350138:A:C
Gene:: IFNA6 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.21350139A>C, NC_000009.11:g.21350138A>C

Select item 147759935517.

rs1477599355 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:21350879 (GRCh38)
9:21350878 (GRCh37)
Canonical SPDI:: NC_000009.12:21350878:C:T
Gene:: IFNA6 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.21350879C>T, NC_000009.11:g.21350878C>T, NM_021002.2:c.9G>A

Select item 147673183918.

rs1476731839 [Homo sapiens]

Variant type:: DELINS
Alleles:: GTT>- [Show Flanks]
Chromosome:: 9:21350017 (GRCh38)
9:21350016 (GRCh37)
Canonical SPDI:: NC_000009.12:21350015:TGTT:T
Gene:: IFNA6 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.21350017_21350019del, NC_000009.11:g.21350016_21350018del

Select item 147671544419.

rs1476715444 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:21351000 (GRCh38)
9:21350999 (GRCh37)
Canonical SPDI:: NC_000009.12:21350999:A:G
Gene:: IFNA6 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.21351000A>G, NC_000009.11:g.21350999A>G

Select item 147661442320.

rs1476614423 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:21351904 (GRCh38)
9:21351903 (GRCh37)
Canonical SPDI:: NC_000009.12:21351903:T:C
Gene:: IFNA6 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000023/6 (TOPMED)
HGVS:: NC_000009.12:g.21351904T>C, NC_000009.11:g.21351903T>C

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