SNP Links for Gene (Select 401253) - SNP

Links from Gene

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Select item 14908544151.

rs1490854415 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:33590654 (GRCh38)
6:33558431 (GRCh37)
Canonical SPDI:: NC_000006.12:33590653:T:C
Gene:: LINC00336 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.33590654T>C, NC_000006.11:g.33558431T>C

Select item 14904755382.

rs1490475538 has merged into rs71536199 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTTTT>-,T,TT,TTT,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 6:33594345 (GRCh38)
6:33562122 (GRCh37)
Canonical SPDI:: NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: LINC00336 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTT=0./0 (ALFA)
HGVS:: NC_000006.12:g.33594345_33594355del, NC_000006.12:g.33594346_33594355del, NC_000006.12:g.33594347_33594355del, NC_000006.12:g.33594348_33594355del, NC_000006.12:g.33594349_33594355del, NC_000006.12:g.33594350_33594355del, NC_000006.12:g.33594351_33594355del, NC_000006.12:g.33594352_33594355del, NC_000006.12:g.33594353_33594355del, NC_000006.12:g.33594354_33594355del, NC_000006.12:g.33594355del, NC_000006.12:g.33594355dup, NC_000006.12:g.33594354_33594355dup, NC_000006.12:g.33594353_33594355dup, NC_000006.12:g.33594352_33594355dup, NC_000006.12:g.33594351_33594355dup, NC_000006.12:g.33594350_33594355dup, NC_000006.12:g.33594349_33594355dup, NC_000006.12:g.33594348_33594355dup, NC_000006.12:g.33594347_33594355dup, NC_000006.12:g.33594346_33594355dup, NC_000006.12:g.33594345_33594355dup, NC_000006.12:g.33594344_33594355dup, NC_000006.12:g.33594343_33594355dup, NC_000006.12:g.33594342_33594355dup, NC_000006.12:g.33594341_33594355dup, NC_000006.12:g.33594339_33594355dup, NC_000006.11:g.33562122_33562132del, NC_000006.11:g.33562123_33562132del, NC_000006.11:g.33562124_33562132del, NC_000006.11:g.33562125_33562132del, NC_000006.11:g.33562126_33562132del, NC_000006.11:g.33562127_33562132del, NC_000006.11:g.33562128_33562132del, NC_000006.11:g.33562129_33562132del, NC_000006.11:g.33562130_33562132del, NC_000006.11:g.33562131_33562132del, NC_000006.11:g.33562132del, NC_000006.11:g.33562132dup, NC_000006.11:g.33562131_33562132dup, NC_000006.11:g.33562130_33562132dup, NC_000006.11:g.33562129_33562132dup, NC_000006.11:g.33562128_33562132dup, NC_000006.11:g.33562127_33562132dup, NC_000006.11:g.33562126_33562132dup, NC_000006.11:g.33562125_33562132dup, NC_000006.11:g.33562124_33562132dup, NC_000006.11:g.33562123_33562132dup, NC_000006.11:g.33562122_33562132dup, NC_000006.11:g.33562121_33562132dup, NC_000006.11:g.33562120_33562132dup, NC_000006.11:g.33562119_33562132dup, NC_000006.11:g.33562118_33562132dup, NC_000006.11:g.33562116_33562132dup

Select item 14904245673.

rs1490424567 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 6:33595162 (GRCh38)
6:33562939 (GRCh37)
Canonical SPDI:: NC_000006.12:33595161:G:T
Gene:: LINC00336 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.33595162G>T, NC_000006.11:g.33562939G>T

Select item 14902144484.

rs1490214448 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 6:33588497 (GRCh38)
6:33556275 (GRCh37)
Canonical SPDI:: NC_000006.12:33588497:C:CC
Gene:: LINC00336 (Varview), GGNBP1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.33588498dup, NC_000006.11:g.33556275dup

Select item 14901754395.

rs1490175439 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 6:33591611 (GRCh38)
6:33559388 (GRCh37)
Canonical SPDI:: NC_000006.12:33591610:T:G
Gene:: LINC00336 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.33591611T>G, NC_000006.11:g.33559388T>G

Select item 14900670726.

rs1490067072 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 6:33589032 (GRCh38)
6:33556809 (GRCh37)
Canonical SPDI:: NC_000006.12:33589031:G:T
Gene:: LINC00336 (Varview), GGNBP1 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,intron_variant
HGVS:: NC_000006.12:g.33589032G>T, NC_000006.11:g.33556809G>T

Select item 14896357507.

rs1489635750 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 6:33589119 (GRCh38)
6:33556896 (GRCh37)
Canonical SPDI:: NC_000006.12:33589118:T:A
Gene:: LINC00336 (Varview), GGNBP1 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.33589119T>A, NC_000006.11:g.33556896T>A

Select item 14893134938.

rs1489313493 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:33586605 (GRCh38)
6:33554382 (GRCh37)
Canonical SPDI:: NC_000006.12:33586604:G:A
Gene:: LINC00336 (Varview), GGNBP1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000019/5 (TOPMED)
A=0.000156/1 (1000Genomes)
HGVS:: NC_000006.12:g.33586605G>A, NC_000006.11:g.33554382G>A, NR_027908.2:n.1608C>T, NR_027908.1:n.1608C>T, NM_207497.1:c.*1009C>T

Select item 14893050169.

rs1489305016 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:33590804 (GRCh38)
6:33558581 (GRCh37)
Canonical SPDI:: NC_000006.12:33590803:T:C
Gene:: LINC00336 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.33590804T>C, NC_000006.11:g.33558581T>C

Select item 148922173410.

rs1489221734 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:33593557 (GRCh38)
6:33561334 (GRCh37)
Canonical SPDI:: NC_000006.12:33593556:A:G
Gene:: LINC00336 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000006.12:g.33593557A>G, NC_000006.11:g.33561334A>G

Select item 148909673311.

rs1489096733 has merged into rs71536199 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTTTT>-,T,TT,TTT,TTTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 6:33594345 (GRCh38)
6:33562122 (GRCh37)
Canonical SPDI:: NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000006.12:33594333:TTTTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Gene:: LINC00336 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTT=0./0 (ALFA)
HGVS:: NC_000006.12:g.33594345_33594355del, NC_000006.12:g.33594346_33594355del, NC_000006.12:g.33594347_33594355del, NC_000006.12:g.33594348_33594355del, NC_000006.12:g.33594349_33594355del, NC_000006.12:g.33594350_33594355del, NC_000006.12:g.33594351_33594355del, NC_000006.12:g.33594352_33594355del, NC_000006.12:g.33594353_33594355del, NC_000006.12:g.33594354_33594355del, NC_000006.12:g.33594355del, NC_000006.12:g.33594355dup, NC_000006.12:g.33594354_33594355dup, NC_000006.12:g.33594353_33594355dup, NC_000006.12:g.33594352_33594355dup, NC_000006.12:g.33594351_33594355dup, NC_000006.12:g.33594350_33594355dup, NC_000006.12:g.33594349_33594355dup, NC_000006.12:g.33594348_33594355dup, NC_000006.12:g.33594347_33594355dup, NC_000006.12:g.33594346_33594355dup, NC_000006.12:g.33594345_33594355dup, NC_000006.12:g.33594344_33594355dup, NC_000006.12:g.33594343_33594355dup, NC_000006.12:g.33594342_33594355dup, NC_000006.12:g.33594341_33594355dup, NC_000006.12:g.33594339_33594355dup, NC_000006.11:g.33562122_33562132del, NC_000006.11:g.33562123_33562132del, NC_000006.11:g.33562124_33562132del, NC_000006.11:g.33562125_33562132del, NC_000006.11:g.33562126_33562132del, NC_000006.11:g.33562127_33562132del, NC_000006.11:g.33562128_33562132del, NC_000006.11:g.33562129_33562132del, NC_000006.11:g.33562130_33562132del, NC_000006.11:g.33562131_33562132del, NC_000006.11:g.33562132del, NC_000006.11:g.33562132dup, NC_000006.11:g.33562131_33562132dup, NC_000006.11:g.33562130_33562132dup, NC_000006.11:g.33562129_33562132dup, NC_000006.11:g.33562128_33562132dup, NC_000006.11:g.33562127_33562132dup, NC_000006.11:g.33562126_33562132dup, NC_000006.11:g.33562125_33562132dup, NC_000006.11:g.33562124_33562132dup, NC_000006.11:g.33562123_33562132dup, NC_000006.11:g.33562122_33562132dup, NC_000006.11:g.33562121_33562132dup, NC_000006.11:g.33562120_33562132dup, NC_000006.11:g.33562119_33562132dup, NC_000006.11:g.33562118_33562132dup, NC_000006.11:g.33562116_33562132dup

Select item 148892345612.

rs1488923456 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:33592812 (GRCh38)
6:33560589 (GRCh37)
Canonical SPDI:: NC_000006.12:33592811:C:T
Gene:: LINC00336 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.33592812C>T, NC_000006.11:g.33560589C>T

Select item 148869027013.

rs1488690270 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:33594907 (GRCh38)
6:33562684 (GRCh37)
Canonical SPDI:: NC_000006.12:33594906:C:T
Gene:: LINC00336 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.33594907C>T, NC_000006.11:g.33562684C>T

Select item 148855561314.

rs1488555613 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TTCCAGCCCCCAGGCCCTGG [Show Flanks]
Chromosome:: 6:33586889 (GRCh38)
6:33554667 (GRCh37)
Canonical SPDI:: NC_000006.12:33586889:GGCCCTGGTTCCAGCCCCCAGGCCCTGG:GGCCCTGGTTCCAGCCCCCAGGCCCTGGTTCCAGCCCCCAGGCCCTGG
Gene:: LINC00336 (Varview), GGNBP1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGCCCTGGTTCCAGCCCCCAGGCCCTGGTTCCAGCCCCCAGGCCCTGG=0.000253/3 (ALFA)
GGCCCTGGTTCCAGCCCCCA=0.000686/96 (GnomAD)
GGCCCTGGTTCCAGCCCCCA=0.001667/1 (NorthernSweden)
HGVS:: NC_000006.12:g.33586898_33586917dup, NC_000006.11:g.33554675_33554694dup, NR_027908.2:n.1304_1323dup, NR_027908.1:n.1304_1323dup, NM_207497.1:c.*705_*724dup

Select item 148823535015.

rs1488235350 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 6:33586708 (GRCh38)
6:33554485 (GRCh37)
Canonical SPDI:: NC_000006.12:33586707:C:G
Gene:: LINC00336 (Varview), GGNBP1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0.00009/1 (ALFA)
HGVS:: NC_000006.12:g.33586708C>G, NC_000006.11:g.33554485C>G, NR_027908.2:n.1505G>C, NR_027908.1:n.1505G>C, NM_207497.1:c.*906G>C, NR_028361.1:n.805C>G, NM_001005478.1:c.136C>G

Select item 148791158616.

rs1487911586 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:33589126 (GRCh38)
6:33556903 (GRCh37)
Canonical SPDI:: NC_000006.12:33589125:C:T
Gene:: LINC00336 (Varview), GGNBP1 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000029/4 (GnomAD)
HGVS:: NC_000006.12:g.33589126C>T, NC_000006.11:g.33556903C>T

Select item 148745817817.

rs1487458178 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:33594744 (GRCh38)
6:33562521 (GRCh37)
Canonical SPDI:: NC_000006.12:33594743:C:T
Gene:: LINC00336 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000006.12:g.33594744C>T, NC_000006.11:g.33562521C>T

Select item 148707507418.

rs1487075074 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:33589024 (GRCh38)
6:33556801 (GRCh37)
Canonical SPDI:: NC_000006.12:33589023:T:C
Gene:: LINC00336 (Varview), GGNBP1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
HGVS:: NC_000006.12:g.33589024T>C, NC_000006.11:g.33556801T>C, NR_028361.1:n.997T>C, NM_001005478.1:c.328T>C

Select item 148556173519.

rs1485561735 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 6:33594675 (GRCh38)
6:33562452 (GRCh37)
Canonical SPDI:: NC_000006.12:33594674:C:G
Gene:: LINC00336 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.33594675C>G, NC_000006.11:g.33562452C>G

Select item 148518248820.

rs1485182488 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,T [Show Flanks]
Chromosome:: 6:33593022 (GRCh38)
6:33560799 (GRCh37)
Canonical SPDI:: NC_000006.12:33593021:A:C,NC_000006.12:33593021:A:T
Gene:: LINC00336 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
C=0.003282/6 (Korea1K)
HGVS:: NC_000006.12:g.33593022A>C, NC_000006.12:g.33593022A>T, NC_000006.11:g.33560799A>C, NC_000006.11:g.33560799A>T, NR_027908.2:n.317T>G, NR_027908.2:n.317T>A, NR_027908.1:n.317T>G, NR_027908.1:n.317T>A, NM_207497.1:c.315T>G, NM_207497.1:c.315T>A

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