SNP Links for Gene (Select 401993) - SNP

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Select item 14910675601.

rs1491067560 [Homo sapiens]

Variant type:: DEL
Alleles:: TT>- [Show Flanks]
Chromosome:: 1:248487715 (GRCh38)
1:248651016 (GRCh37)
Canonical SPDI:: NC_000001.11:248487714:TT:
Gene:: OR2T5 (Varview), LOC105373277 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000001.11:g.248487715_248487716del, NC_000001.10:g.248651016_248651017del, NW_025791755.1:g.202284_202285del, NT_187518.1:g.141755_141756del, NT_187646.1:g.138133_138134del

Select item 14907722332.

rs1490772233 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:248488222 (GRCh38)
1:248651523 (GRCh37)
Canonical SPDI:: NC_000001.11:248488221:C:T
Gene:: OR2T5 (Varview), LOC105373277 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0.00346/41 (ALFA)
HGVS:: NC_000001.11:g.248488222C>T, NC_000001.10:g.248651523C>T, NW_025791755.1:g.201778G>A, NT_187518.1:g.142262C>T, NT_187646.1:g.138640C>T

Select item 14871993963.

rs1487199396 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 1:248489089 (GRCh38)
1:248652390 (GRCh37)
Canonical SPDI:: NC_000001.11:248489088:C:G,NC_000001.11:248489088:C:T
Gene:: OR2T5 (Varview), LOC105373277 (Varview)
Functional Consequence:: intron_variant,synonymous_variant,coding_sequence_variant
HGVS:: NC_000001.11:g.248489089C>G, NC_000001.11:g.248489089C>T, NC_000001.10:g.248652390C>G, NC_000001.10:g.248652390C>T, NW_025791755.1:g.200911G>C, NW_025791755.1:g.200911G>A, NT_187518.1:g.143129C>G, NT_187518.1:g.143129C>T, NT_187646.1:g.139507C>G, NT_187646.1:g.139507C>T, NM_001004697.2:c.501C>G, NM_001004697.2:c.501C>T, NM_001004697.1:c.501C>G, NM_001004697.1:c.501C>T

Select item 14861477984.

rs1486147798 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 1:248488047 (GRCh38)
1:248651348 (GRCh37)
Canonical SPDI:: NC_000001.11:248488046:C:G,NC_000001.11:248488046:C:T
Gene:: OR2T5 (Varview), LOC105373277 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000001.11:g.248488047C>G, NC_000001.11:g.248488047C>T, NC_000001.10:g.248651348C>G, NC_000001.10:g.248651348C>T, NW_025791755.1:g.201953G>C, NW_025791755.1:g.201953G>A, NT_187518.1:g.142087C>G, NT_187518.1:g.142087C>T, NT_187646.1:g.138465C>G, NT_187646.1:g.138465C>T

Select item 14844942925.

rs1484494292 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:248488884 (GRCh38)
1:248652185 (GRCh37)
Canonical SPDI:: NC_000001.11:248488883:C:T
Gene:: OR2T5 (Varview), LOC105373277 (Varview)
Functional Consequence:: intron_variant,missense_variant,coding_sequence_variant
HGVS:: NC_000001.11:g.248488884C>T, NC_000001.10:g.248652185C>T, NW_025791755.1:g.201116G>A, NT_187518.1:g.142924C>T, NT_187646.1:g.139302C>T, NM_001004697.2:c.296C>T, NM_001004697.1:c.296C>T, NP_001004697.1:p.Pro99Leu

Select item 14813821806.

rs1481382180 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 1:248488497 (GRCh38)
1:248651798 (GRCh37)
Canonical SPDI:: NC_000001.11:248488496:A:T
Gene:: OR2T5 (Varview), LOC105373277 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000009/1 (GnomAD)
T=0.000036/1 (TOMMO)
HGVS:: NC_000001.11:g.248488497A>T, NC_000001.10:g.248651798A>T, NW_025791755.1:g.201503T>A, NT_187518.1:g.142537A>T, NT_187646.1:g.138915A>T

Select item 14813316767.

rs1481331676 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:248487823 (GRCh38)
1:248651124 (GRCh37)
Canonical SPDI:: NC_000001.11:248487822:A:G
Gene:: OR2T5 (Varview), LOC105373277 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.00001/1 (GnomAD)
HGVS:: NC_000001.11:g.248487823A>G, NC_000001.10:g.248651124A>G, NW_025791755.1:g.202177T>C, NT_187518.1:g.141863A>G, NT_187646.1:g.138241A>G

Select item 14772077448.

rs1477207744 [Homo sapiens]

Variant type:: DELINS
Alleles:: ATCT>- [Show Flanks]
Chromosome:: 1:248488911 (GRCh38)
1:248652212 (GRCh37)
Canonical SPDI:: NC_000001.11:248488907:TCTATCT:TCT
Gene:: OR2T5 (Varview), LOC105373277 (Varview)
Functional Consequence:: stop_gained,intron_variant,coding_sequence_variant
Validated:: by frequency
MAF:: -=0.00002/2 (GnomAD_exomes)
HGVS:: NC_000001.11:g.248488911_248488914del, NC_000001.10:g.248652212_248652215del, NW_025791755.1:g.201089_201092del, NT_187518.1:g.142951_142954del, NT_187646.1:g.139329_139332del, NM_001004697.2:c.323_326del, NM_001004697.1:c.323_326del, NP_001004697.1:p.Leu107_Tyr108insTer

Select item 14770126369.

rs1477012636 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:248487627 (GRCh38)
1:248650928 (GRCh37)
Canonical SPDI:: NC_000001.11:248487626:G:A
Gene:: OR2T5 (Varview), LOC105373277 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000019/2 (GnomAD)
HGVS:: NC_000001.11:g.248487627G>A, NC_000001.10:g.248650928G>A, NW_025791755.1:g.202373C>T, NT_187518.1:g.141667G>A, NT_187646.1:g.138045G>A

Select item 147563515610.

rs1475635156 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:248488193 (GRCh38)
1:248651494 (GRCh37)
Canonical SPDI:: NC_000001.11:248488192:C:T
Gene:: OR2T5 (Varview), LOC105373277 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000001.11:g.248488193C>T, NC_000001.10:g.248651494C>T, NW_025791755.1:g.201807G>A, NT_187518.1:g.142233C>T, NT_187646.1:g.138611C>T

Select item 147550146711.

rs1475501467 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 1:248488823 (GRCh38)
1:248652124 (GRCh37)
Canonical SPDI:: NC_000001.11:248488822:T:G
Gene:: OR2T5 (Varview), LOC105373277 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant,intron_variant
Validated:: by frequency
MAF:: G=0.000005/1 (GnomAD_exomes)
HGVS:: NC_000001.11:g.248488823T>G, NC_000001.10:g.248652124T>G, NW_025791755.1:g.201177A>C, NT_187518.1:g.142863T>G, NT_187646.1:g.139241T>G, NM_001004697.2:c.235T>G, NM_001004697.1:c.235T>G, NP_001004697.1:p.Ser79Ala

Select item 147267765412.

rs1472677654 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTGT>- [Show Flanks]
Chromosome:: 1:248488275 (GRCh38)
1:248651576 (GRCh37)
Canonical SPDI:: NC_000001.11:248488271:TGTTTGT:TGT
Gene:: OR2T5 (Varview), LOC105373277 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGT=0.00043/7 (ALFA)
-=0.00011/2 (TOMMO)
-=0.00017/6 (GnomAD)
HGVS:: NC_000001.11:g.248488275_248488278del, NC_000001.10:g.248651576_248651579del, NW_025791755.1:g.201725_201728del, NT_187518.1:g.142315_142318del, NT_187646.1:g.138693_138696del

Select item 147234122213.

rs1472341222 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:248488606 (GRCh38)
1:248651907 (GRCh37)
Canonical SPDI:: NC_000001.11:248488605:G:C
Gene:: OR2T5 (Varview), LOC105373277 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant,intron_variant
Validated:: by frequency
MAF:: C=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000001.11:g.248488606G>C, NC_000001.10:g.248651907G>C, NW_025791755.1:g.201394C>G, NT_187518.1:g.142646G>C, NT_187646.1:g.139024G>C, NM_001004697.2:c.18G>C, NM_001004697.1:c.18G>C, NP_001004697.1:p.Arg6Ser

Select item 147071811614.

rs1470718116 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:248487642 (GRCh38)
1:248650943 (GRCh37)
Canonical SPDI:: NC_000001.11:248487641:A:G
Gene:: OR2T5 (Varview), LOC105373277 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0.0002/1 (ALFA)
HGVS:: NC_000001.11:g.248487642A>G, NC_000001.10:g.248650943A>G, NW_025791755.1:g.202358T>C, NT_187518.1:g.141682A>G, NT_187646.1:g.138060A>G

Select item 147059896315.

rs1470598963 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 1:248488632 (GRCh38)
1:248651933 (GRCh37)
Canonical SPDI:: NC_000001.11:248488631:A:T
Gene:: OR2T5 (Varview), LOC105373277 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.248488632A>T, NC_000001.10:g.248651933A>T, NW_025791755.1:g.201368T>A, NT_187518.1:g.142672A>T, NT_187646.1:g.139050A>T, NM_001004697.2:c.44A>T, NM_001004697.1:c.44A>T, NP_001004697.1:p.Asp15Val

Select item 147025801916.

rs1470258019 [Homo sapiens]

Variant type:: DEL
Alleles:: GTACTGAATCTGGAGA>- [Show Flanks]
Chromosome:: 1:248487656 (GRCh38)
1:248650957 (GRCh37)
Canonical SPDI:: NC_000001.11:248487655:GTACTGAATCTGGAGA:
Gene:: OR2T5 (Varview), LOC105373277 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.000084/1 (ALFA)
-=0.000009/1 (GnomAD)
-=0.000023/6 (TOPMED)
HGVS:: NC_000001.11:g.248487656_248487671del, NC_000001.10:g.248650957_248650972del, NW_025791755.1:g.202329_202344del, NT_187518.1:g.141696_141711del, NT_187646.1:g.138074_138089del

Select item 146801072017.

rs1468010720 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:248488239 (GRCh38)
1:248651540 (GRCh37)
Canonical SPDI:: NC_000001.11:248488238:G:C
Gene:: OR2T5 (Varview), LOC105373277 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000001.11:g.248488239G>C, NC_000001.10:g.248651540G>C, NW_025791755.1:g.201761C>G, NT_187518.1:g.142279G>C, NT_187646.1:g.138657G>C

Select item 146768729218.

rs1467687292 [Homo sapiens]

Variant type:: DEL
Alleles:: TTG>- [Show Flanks]
Chromosome:: 1:248489313 (GRCh38)
1:248652614 (GRCh37)
Canonical SPDI:: NC_000001.11:248489312:TTG:
Gene:: OR2T5 (Varview), LOC105373277 (Varview)
Functional Consequence:: coding_sequence_variant,inframe_indel,intron_variant
HGVS:: NC_000001.11:g.248489313_248489315del, NC_000001.10:g.248652614_248652616del, NW_025791755.1:g.200685_200687del, NT_187518.1:g.143353_143355del, NT_187646.1:g.139731_139733del, NM_001004697.2:c.725_727del, NM_001004697.1:c.725_727del, NP_001004697.1:p.Phe242_Ala243delinsSer

Select item 146644790719.

rs1466447907 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 1:248488592 (GRCh38)
1:248651894 (GRCh37)
Canonical SPDI:: NC_000001.11:248488592:CC:CCC
Gene:: OR2T5 (Varview), LOC105373277 (Varview)
Functional Consequence:: coding_sequence_variant,frameshift_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: CCC=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.248488594dup, NC_000001.10:g.248651895dup, NW_025791755.1:g.201407dup, NT_187518.1:g.142634dup, NT_187646.1:g.139012dup, NM_001004697.2:c.6dup, NM_001004697.1:c.6dup, NP_001004697.1:p.Asn3fs

Select item 146544772920.

rs1465447729 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:248487508 (GRCh38)
1:248650809 (GRCh37)
Canonical SPDI:: NC_000001.11:248487507:T:C
Gene:: OR2T5 (Varview), LOC105373277 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0.00008/1 (ALFA)
C=0.00006/4 (GnomAD)
HGVS:: NC_000001.11:g.248487508T>C, NC_000001.10:g.248650809T>C, NW_025791755.1:g.202492A>G, NT_187518.1:g.141548T>C, NT_187646.1:g.137926T>C

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