SNP Links for Gene (Select 406926) - SNP

Links from Gene

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Select item 14893423031.

rs1489342303 [Homo sapiens]

Variant type:: DELINS
Alleles:: CAGAGGGCAGTGCTTAATAG>- [Show Flanks]
Chromosome:: 12:97562928 (GRCh38)
12:97956706 (GRCh37)
Canonical SPDI:: NC_000012.12:97562925:AGCAGAGGGCAGTGCTTAATAG:AG
Gene:: RMST (Varview), MIR135A2 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: AG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.97562928_97562947del, NC_000012.11:g.97956706_97956725del

Select item 14880353752.

rs1488035375 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 12:97562892 (GRCh38)
12:97956670 (GRCh37)
Canonical SPDI:: NC_000012.12:97562891:A:G,NC_000012.12:97562891:A:T
Gene:: RMST (Varview), MIR135A2 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.97562892A>G, NC_000012.12:g.97562892A>T, NC_000012.11:g.97956670A>G, NC_000012.11:g.97956670A>T

Select item 14863253613.

rs1486325361 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:97563210 (GRCh38)
12:97956988 (GRCh37)
Canonical SPDI:: NC_000012.12:97563209:G:A
Gene:: RMST (Varview), MIR135A2 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000019/5 (TOPMED)
A=0.000029/4 (GnomAD)
A=0.000342/1 (KOREAN)
HGVS:: NC_000012.12:g.97563210G>A, NC_000012.11:g.97956988G>A

Select item 14862476994.

rs1486247699 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 12:97563041 (GRCh38)
12:97956819 (GRCh37)
Canonical SPDI:: NC_000012.12:97563040:T:A
Gene:: RMST (Varview), MIR135A2 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000012.12:g.97563041T>A, NC_000012.11:g.97956819T>A

Select item 14850702265.

rs1485070226 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 12:97562342 (GRCh38)
12:97956120 (GRCh37)
Canonical SPDI:: NC_000012.12:97562341:AAA:AA
Gene:: RMST (Varview), MIR135A2 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0./0 (ALFA)
-=0.000011/3 (TOPMED)
-=0.000014/2 (GnomAD)
HGVS:: NC_000012.12:g.97562344del, NC_000012.11:g.97956122del

Select item 14849607066.

rs1484960706 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:97564005 (GRCh38)
12:97957783 (GRCh37)
Canonical SPDI:: NC_000012.12:97564004:C:T
Gene:: RMST (Varview), MIR135A2 (Varview)
Functional Consequence:: downstream_transcript_variant,intron_variant,genic_downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000012.12:g.97564005C>T, NC_000012.11:g.97957783C>T

Select item 14849292027.

rs1484929202 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:97562780 (GRCh38)
12:97956558 (GRCh37)
Canonical SPDI:: NC_000012.12:97562779:A:G
Gene:: RMST (Varview), MIR135A2 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.97562780A>G, NC_000012.11:g.97956558A>G

Select item 14838931078.

rs1483893107 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:97563770 (GRCh38)
12:97957548 (GRCh37)
Canonical SPDI:: NC_000012.12:97563769:G:A
Gene:: RMST (Varview), MIR135A2 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: A=0.000006/1 (GnomAD_exomes)
HGVS:: NC_000012.12:g.97563770G>A, NC_000012.11:g.97957548G>A

Select item 14838085789.

rs1483808578 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:97564174 (GRCh38)
12:97957952 (GRCh37)
Canonical SPDI:: NC_000012.12:97564173:T:C
Gene:: RMST (Varview), MIR135A2 (Varview)
Functional Consequence:: non_coding_transcript_variant,downstream_transcript_variant,genic_downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.97564174T>C, NC_000012.11:g.97957952T>C, NR_152618.1:n.1558T>C

Select item 147884149410.

rs1478841494 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 12:97563023 (GRCh38)
12:97956801 (GRCh37)
Canonical SPDI:: NC_000012.12:97563022:A:
Gene:: RMST (Varview), MIR135A2 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0.000071/1 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.97563023del, NC_000012.11:g.97956801del

Select item 147785929111.

rs1477859291 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 12:97563547 (GRCh38)
12:97957325 (GRCh37)
Canonical SPDI:: NC_000012.12:97563546:T:A
Gene:: RMST (Varview), MIR135A2 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.97563547T>A, NC_000012.11:g.97957325T>A

Select item 147761936012.

rs1477619360 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 12:97562520 (GRCh38)
12:97956298 (GRCh37)
Canonical SPDI:: NC_000012.12:97562519:G:T
Gene:: RMST (Varview), MIR135A2 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.97562520G>T, NC_000012.11:g.97956298G>T

Select item 147718369013.

rs1477183690 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:97563918 (GRCh38)
12:97957696 (GRCh37)
Canonical SPDI:: NC_000012.12:97563917:A:G
Gene:: RMST (Varview), MIR135A2 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,genic_downstream_transcript_variant,500B_downstream_variant
Validated:: by cluster
HGVS:: NC_000012.12:g.97563918A>G, NC_000012.11:g.97957696A>G

Select item 147460553514.

rs1474605535 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:97563659 (GRCh38)
12:97957437 (GRCh37)
Canonical SPDI:: NC_000012.12:97563658:A:G
Gene:: RMST (Varview), MIR135A2 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.97563659A>G, NC_000012.11:g.97957437A>G

Select item 147457507115.

rs1474575071 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 12:97562462 (GRCh38)
12:97956240 (GRCh37)
Canonical SPDI:: NC_000012.12:97562461:G:T
Gene:: RMST (Varview), MIR135A2 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.97562462G>T, NC_000012.11:g.97956240G>T

Select item 147317881816.

rs1473178818 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:97563170 (GRCh38)
12:97956948 (GRCh37)
Canonical SPDI:: NC_000012.12:97563169:A:G
Gene:: RMST (Varview), MIR135A2 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.97563170A>G, NC_000012.11:g.97956948A>G

Select item 147141832717.

rs1471418327 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 12:97562065 (GRCh38)
12:97955843 (GRCh37)
Canonical SPDI:: NC_000012.12:97562064:C:G
Gene:: RMST (Varview), MIR135A2 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.97562065C>G, NC_000012.11:g.97955843C>G

Select item 147012670518.

rs1470126705 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 12:97562197 (GRCh38)
12:97955975 (GRCh37)
Canonical SPDI:: NC_000012.12:97562196:A:T
Gene:: RMST (Varview), MIR135A2 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.97562197A>T, NC_000012.11:g.97955975A>T

Select item 147001925019.

rs1470019250 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 12:97563275 (GRCh38)
12:97957053 (GRCh37)
Canonical SPDI:: NC_000012.12:97563274:T:A,NC_000012.12:97563274:T:C
Gene:: RMST (Varview), MIR135A2 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.97563275T>A, NC_000012.12:g.97563275T>C, NC_000012.11:g.97957053T>A, NC_000012.11:g.97957053T>C

Select item 146971641520.

rs1469716415 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:97562097 (GRCh38)
12:97955875 (GRCh37)
Canonical SPDI:: NC_000012.12:97562096:A:G
Gene:: RMST (Varview), MIR135A2 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000023/6 (TOPMED)
HGVS:: NC_000012.12:g.97562097A>G, NC_000012.11:g.97955875A>G

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