SNP Links for Gene (Select 56664) - SNP

Warning: The NCBI web site requires JavaScript to function. more...

Links from Gene

Items: 1 to 20 of 698

<< First< Prev

Page of 35

Next >Last >>

Select item 14913486811.

rs1491348681 has merged into rs3060717 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAA>-,A,AA,AAA,AAAAA,AAAAAA [Show Flanks]
Chromosome:: 5:140710393 (GRCh38)
5:140089978 (GRCh37)
Canonical SPDI:: NC_000005.10:140710385:AAAAAAAAAAA:AAAAAAA,NC_000005.10:140710385:AAAAAAAAAAA:AAAAAAAA,NC_000005.10:140710385:AAAAAAAAAAA:AAAAAAAAA,NC_000005.10:140710385:AAAAAAAAAAA:AAAAAAAAAA,NC_000005.10:140710385:AAAAAAAAAAA:AAAAAAAAAAAA,NC_000005.10:140710385:AAAAAAAAAAA:AAAAAAAAAAAAA
Gene:: VTRNA1-1 (Varview), LOC105378198 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAA=0./0 (ALFA)
-=0.44/264 (NorthernSweden)
-=0.4728/2368 (1000Genomes)
HGVS:: NC_000005.10:g.140710393_140710396del, NC_000005.10:g.140710394_140710396del, NC_000005.10:g.140710395_140710396del, NC_000005.10:g.140710396del, NC_000005.10:g.140710396dup, NC_000005.10:g.140710395_140710396dup, NC_000005.9:g.140089978_140089981del, NC_000005.9:g.140089979_140089981del, NC_000005.9:g.140089980_140089981del, NC_000005.9:g.140089981del, NC_000005.9:g.140089981dup, NC_000005.9:g.140089980_140089981dup

Select item 14913313722.

rs1491331372 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 5:140710385 (GRCh38)
5:140089970 (GRCh37)
Canonical SPDI:: NC_000005.10:140710384:CA:
Gene:: VTRNA1-1 (Varview), LOC105378198 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000005.10:g.140710385_140710386del, NC_000005.9:g.140089970_140089971del

Select item 14892630973.

rs1489263097 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:140710296 (GRCh38)
5:140089881 (GRCh37)
Canonical SPDI:: NC_000005.10:140710295:A:G
Gene:: VTRNA1-1 (Varview), LOC105378198 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.140710296A>G, NC_000005.9:g.140089881A>G

Select item 14871255984.

rs1487125598 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 5:140710818 (GRCh38)
5:140090403 (GRCh37)
Canonical SPDI:: NC_000005.10:140710817:G:A,NC_000005.10:140710817:G:C
Gene:: VTRNA1-1 (Varview), LOC105378198 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.140710818G>A, NC_000005.10:g.140710818G>C, NC_000005.9:g.140090403G>A, NC_000005.9:g.140090403G>C, NG_083844.1:g.380G>A, NG_083844.1:g.380G>C

Select item 14860187555.

rs1486018755 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 5:140709562 (GRCh38)
5:140089147 (GRCh37)
Canonical SPDI:: NC_000005.10:140709561:G:A,NC_000005.10:140709561:G:C
Gene:: VTRNA1-1 (Varview), LOC105378198 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
A=0.000035/1 (TOMMO)
HGVS:: NC_000005.10:g.140709562G>A, NC_000005.10:g.140709562G>C, NC_000005.9:g.140089147G>A, NC_000005.9:g.140089147G>C

Select item 14851265736.

rs1485126573 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 5:140710971 (GRCh38)
5:140090556 (GRCh37)
Canonical SPDI:: NC_000005.10:140710970:G:A,NC_000005.10:140710970:G:C
Gene:: VTRNA1-1 (Varview), LOC105378198 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000005.10:g.140710971G>A, NC_000005.10:g.140710971G>C, NC_000005.9:g.140090556G>A, NC_000005.9:g.140090556G>C, NG_083844.1:g.533G>A, NG_083844.1:g.533G>C

Select item 14840013647.

rs1484001364 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 5:140709849 (GRCh38)
5:140089434 (GRCh37)
Canonical SPDI:: NC_000005.10:140709848:G:A,NC_000005.10:140709848:G:T
Gene:: VTRNA1-1 (Varview), LOC105378198 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.00007/2 (TOMMO)
A=0.00103/3 (KOREAN)
A=0.00109/2 (Korea1K)
HGVS:: NC_000005.10:g.140709849G>A, NC_000005.10:g.140709849G>T, NC_000005.9:g.140089434G>A, NC_000005.9:g.140089434G>T

Select item 14836781788.

rs1483678178 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:140709447 (GRCh38)
5:140089032 (GRCh37)
Canonical SPDI:: NC_000005.10:140709446:C:T
Gene:: VTRNA1-1 (Varview), LOC105378198 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000005.10:g.140709447C>T, NC_000005.9:g.140089032C>T

Select item 14831849139.

rs1483184913 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 5:140709315 (GRCh38)
5:140088900 (GRCh37)
Canonical SPDI:: NC_000005.10:140709314:C:G
Gene:: VTRNA1-1 (Varview), LOC105378198 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0./0 (KOREAN)
G=0.000004/1 (TOPMED)
G=0.000546/1 (Korea1K)
HGVS:: NC_000005.10:g.140709315C>G, NC_000005.9:g.140088900C>G

Select item 148274318610.

rs1482743186 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 5:140711614 (GRCh38)
5:140091199 (GRCh37)
Canonical SPDI:: NC_000005.10:140711613:A:
Gene:: VTRNA1-1 (Varview), LOC105378198 (Varview)
Functional Consequence:: 500B_downstream_variant,intron_variant,genic_upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000011/3 (TOPMED)
HGVS:: NC_000005.10:g.140711614del, NC_000005.9:g.140091199del, NG_083844.1:g.1176del

Select item 148240302711.

rs1482403027 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 5:140710361 (GRCh38)
5:140089947 (GRCh37)
Canonical SPDI:: NC_000005.10:140710361:GG:GGG
Gene:: VTRNA1-1 (Varview), LOC105378198 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGG=0.00061/10 (ALFA)
G=0.00223/10 (Estonian)
HGVS:: NC_000005.10:g.140710363dup, NC_000005.9:g.140089948dup

Select item 148235420612.

rs1482354206 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:140710622 (GRCh38)
5:140090207 (GRCh37)
Canonical SPDI:: NC_000005.10:140710621:C:T
Gene:: VTRNA1-1 (Varview), LOC105378198 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.140710622C>T, NC_000005.9:g.140090207C>T, NG_083844.1:g.184C>T

Select item 148205728713.

rs1482057287 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 5:140710527 (GRCh38)
5:140090112 (GRCh37)
Canonical SPDI:: NC_000005.10:140710526:C:A
Gene:: VTRNA1-1 (Varview), LOC105378198 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000043/6 (GnomAD)
A=0.000087/23 (TOPMED)
A=0.000156/1 (1000Genomes)
A=0.001168/20 (TOMMO)
A=0.002396/7 (KOREAN)
A=0.003275/6 (Korea1K)
HGVS:: NC_000005.10:g.140710527C>A, NC_000005.9:g.140090112C>A, NG_083844.1:g.89C>A

Select item 148077302114.

rs1480773021 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 5:140711057 (GRCh38)
5:140090642 (GRCh37)
Canonical SPDI:: NC_000005.10:140711056:G:C
Gene:: VTRNA1-1 (Varview), LOC105378198 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.140711057G>C, NC_000005.9:g.140090642G>C, NG_083844.1:g.619G>C

Select item 147871590115.

rs1478715901 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 5:140709662 (GRCh38)
5:140089247 (GRCh37)
Canonical SPDI:: NC_000005.10:140709661:C:G
Gene:: VTRNA1-1 (Varview), LOC105378198 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000015/4 (TOPMED)
HGVS:: NC_000005.10:g.140709662C>G, NC_000005.9:g.140089247C>G

Select item 147868983016.

rs1478689830 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:140711613 (GRCh38)
5:140091198 (GRCh37)
Canonical SPDI:: NC_000005.10:140711612:C:T
Gene:: VTRNA1-1 (Varview), LOC105378198 (Varview)
Functional Consequence:: downstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.140711613C>T, NC_000005.9:g.140091198C>T, NG_083844.1:g.1175C>T

Select item 147709843017.

rs1477098430 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAG>- [Show Flanks]
Chromosome:: 5:140711038 (GRCh38)
5:140090623 (GRCh37)
Canonical SPDI:: NC_000005.10:140711035:AGAAG:AG
Gene:: VTRNA1-1 (Varview), LOC105378198 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AG=0./0 (ALFA)
-=0.000008/2 (TOPMED)
-=0.000014/2 (GnomAD)
HGVS:: NC_000005.10:g.140711038_140711040del, NC_000005.9:g.140090623_140090625del, NG_083844.1:g.600_602del

Select item 147659024218.

rs1476590242 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 5:140711607 (GRCh38)
5:140091192 (GRCh37)
Canonical SPDI:: NC_000005.10:140711606:T:G
Gene:: VTRNA1-1 (Varview), LOC105378198 (Varview)
Functional Consequence:: downstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000015/4 (TOPMED)
G=0.000029/4 (GnomAD)
HGVS:: NC_000005.10:g.140711607T>G, NC_000005.9:g.140091192T>G, NG_083844.1:g.1169T>G

Select item 147564747919.

rs1475647479 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 5:140709297 (GRCh38)
5:140088882 (GRCh37)
Canonical SPDI:: NC_000005.10:140709296:A:C,NC_000005.10:140709296:A:G
Gene:: VTRNA1-1 (Varview), LOC105378198 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.00328/6 (Korea1K)
HGVS:: NC_000005.10:g.140709297A>C, NC_000005.10:g.140709297A>G, NC_000005.9:g.140088882A>C, NC_000005.9:g.140088882A>G

Select item 147546765920.

rs1475467659 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 5:140710600 (GRCh38)
5:140090185 (GRCh37)
Canonical SPDI:: NC_000005.10:140710599:G:C
Gene:: VTRNA1-1 (Varview), LOC105378198 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.140710600G>C, NC_000005.9:g.140090185G>C, NG_083844.1:g.162G>C